Gene annotation
Transcriptome id Sobic.009G192700.1
Synonym BRCA1, ATBRCA1, Sb09g025150
Functional annotation ATBARD1/BARD1, putative, expressed
UniProt C5Z0U2
Pfam PF13920 PF13771 PF00533
Panther DB PTHR13763 PTHR13763:SF1
NCBI CDD -
KEGG Orthology K10683; BRCA1-associated RING domain protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G21070 : breast cancer susceptibility1
RAP-DB (Rice) LOC_Os05g43610.1 : ATBARD1/BARD1, putative, expressed
MaizeGDB (Corn) Zm00025a044196
Brachypodium KQK05477
Barley HORVU1Hr1G077590.3 , HORVU1Hr1G077590.2 , HORVU1Hr1G077590.1 , HORVU1Hr1G077590.6 , HORVU1Hr1G077590.4 , HORVU1Hr1G077590.8 , HORVU1Hr1G077590.19 , HORVU1Hr1G077590.18 , HORVU1Hr1G077590.13 , HORVU1Hr1G077590.12 , HORVU1Hr1G077590.16 , HORVU1Hr1G077590.15 , HORVU1Hr1G077590.14
Wheat TraesCS1A02G329600 , TraesCS1A02G329600 , TraesCS1B02G343100 , TraesCS1B02G343100 , TraesCS1D02G331700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G272300 expressed protein -
2 Sobic.005G164900 expressed protein -
3 Sobic.003G008700 MYB family transcription factor, putative, expressed -
4 Sobic.008G075100 hhH-GPD superfamily base excision DNA repair protein, putative, expressed K03575: A/G-specific adenine glycosylase
5 Sobic.002G113600 rhoGAP domain containing protein, expressed -
6 Sobic.003G043900 kinesin-4, putative, expressed K10406: kinesin family member C2/C3
7 Sobic.001G230300 shugoshin-1, putative, expressed -
8 Sobic.004G020600 ATXR, putative, expressed -
9 Sobic.001G088400 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
10 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
11 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
12 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
13 Sobic.003G055600 expressed protein -
14 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
15 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
16 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
17 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
18 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5
19 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
20 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5


Gene co-expression network
sample Sobic009G192700 Sobic009G192700 Sobic002G272300 Sobic002G272300 Sobic009G192700--Sobic002G272300 Sobic005G164900 Sobic005G164900 Sobic009G192700--Sobic005G164900 Sobic003G008700 Sobic003G008700 Sobic009G192700--Sobic003G008700 Sobic008G075100 Sobic008G075100 Sobic009G192700--Sobic008G075100 Sobic002G113600 Sobic002G113600 Sobic009G192700--Sobic002G113600 Sobic003G043900 Sobic003G043900 Sobic009G192700--Sobic003G043900 Sobic001G230300 Sobic001G230300 Sobic009G192700--Sobic001G230300 Sobic004G020600 Sobic004G020600 Sobic009G192700--Sobic004G020600 Sobic001G088400 Sobic001G088400 Sobic009G192700--Sobic001G088400 Sobic007G007800 Sobic007G007800 Sobic002G272300--Sobic007G007800 Sobic009G184200 Sobic009G184200 Sobic002G272300--Sobic009G184200 Sobic010G147700 Sobic010G147700 Sobic002G272300--Sobic010G147700 Sobic003G032200 Sobic003G032200 Sobic002G272300--Sobic003G032200 Sobic009G087000 Sobic009G087000 Sobic002G272300--Sobic009G087000 Sobic001G083300 Sobic001G083300 Sobic002G272300--Sobic001G083300 Sobic004G331600 Sobic004G331600 Sobic002G272300--Sobic004G331600 Sobic008G129200 Sobic008G129200 Sobic002G272300--Sobic008G129200 Sobic001G456500 Sobic001G456500 Sobic002G272300--Sobic001G456500 Sobic005G164900--Sobic002G113600 Sobic004G339500 Sobic004G339500 Sobic005G164900--Sobic004G339500 Sobic008G114900 Sobic008G114900 Sobic005G164900--Sobic008G114900 Sobic005G164900--Sobic003G008700 Sobic006G215200 Sobic006G215200 Sobic005G164900--Sobic006G215200 Sobic005G164900--Sobic001G230300 Sobic001G091500 Sobic001G091500 Sobic005G164900--Sobic001G091500 Sobic008G006800 Sobic008G006800 Sobic005G164900--Sobic008G006800 Sobic001G540200 Sobic001G540200 Sobic005G164900--Sobic001G540200 Sobic001G170800 Sobic001G170800 Sobic003G008700--Sobic001G170800 Sobic004G047100 Sobic004G047100 Sobic003G008700--Sobic004G047100 Sobic003G008700--Sobic009G184200 Sobic005G000500 Sobic005G000500 Sobic003G008700--Sobic005G000500 Sobic005G110535 Sobic005G110535 Sobic003G008700--Sobic005G110535 Sobic010G105400 Sobic010G105400 Sobic003G008700--Sobic010G105400 Sobic008G148000 Sobic008G148000 Sobic003G008700--Sobic008G148000 Sobic003G444100 Sobic003G444100 Sobic003G008700--Sobic003G444100 Sobic001G398400 Sobic001G398400 Sobic003G008700--Sobic001G398400 Sobic003G444300 Sobic003G444300 Sobic008G075100--Sobic003G444300 Sobic008G113300 Sobic008G113300 Sobic008G075100--Sobic008G113300 Sobic009G087300 Sobic009G087300 Sobic008G075100--Sobic009G087300 Sobic007G006800 Sobic007G006800 Sobic008G075100--Sobic007G006800 Sobic008G075100--Sobic009G192700 Sobic008G075100--Sobic001G083300 Sobic003G153900 Sobic003G153900 Sobic008G075100--Sobic003G153900 Sobic001G105800 Sobic001G105800 Sobic008G075100--Sobic001G105800 Sobic008G075100--Sobic009G184200 Sobic002G113600--Sobic005G164900 Sobic002G113600--Sobic006G215200 Sobic008G093600 Sobic008G093600 Sobic002G113600--Sobic008G093600 Sobic002G113600--Sobic003G008700 Sobic002G224200 Sobic002G224200 Sobic002G113600--Sobic002G224200 Sobic002G113600--Sobic008G114900 Sobic002G113600--Sobic004G339500 Sobic007G168900 Sobic007G168900 Sobic002G113600--Sobic007G168900 Sobic002G113600--Sobic003G043900 Sobic001G109700 Sobic001G109700 Sobic003G043900--Sobic001G109700 Sobic002G296000 Sobic002G296000 Sobic003G043900--Sobic002G296000 Sobic007G125300 Sobic007G125300 Sobic003G043900--Sobic007G125300 Sobic001G304800 Sobic001G304800 Sobic003G043900--Sobic001G304800 Sobic003G043900--Sobic005G110535 Sobic009G146250 Sobic009G146250 Sobic003G043900--Sobic009G146250 Sobic003G043900--Sobic003G008700 Sobic004G156200 Sobic004G156200 Sobic003G043900--Sobic004G156200 Sobic009G101100 Sobic009G101100 Sobic003G043900--Sobic009G101100 Sobic001G230300--Sobic001G091500 Sobic003G387700 Sobic003G387700 Sobic001G230300--Sobic003G387700 Sobic001G230300--Sobic008G114900 Sobic003G102000 Sobic003G102000 Sobic001G230300--Sobic003G102000 Sobic001G230300--Sobic004G339500 Sobic010G119300 Sobic010G119300 Sobic001G230300--Sobic010G119300 Sobic003G260700 Sobic003G260700 Sobic001G230300--Sobic003G260700 Sobic008G125700 Sobic008G125700 Sobic001G230300--Sobic008G125700 Sobic002G222500 Sobic002G222500 Sobic001G230300--Sobic002G222500 Sobic004G020600--Sobic009G087000 Sobic004G020600--Sobic010G147700 Sobic004G355500 Sobic004G355500 Sobic004G020600--Sobic004G355500 Sobic004G020600--Sobic001G456500 Sobic010G103700 Sobic010G103700 Sobic004G020600--Sobic010G103700 Sobic006G116500 Sobic006G116500 Sobic004G020600--Sobic006G116500 Sobic003G361200 Sobic003G361200 Sobic004G020600--Sobic003G361200 Sobic003G183700 Sobic003G183700 Sobic004G020600--Sobic003G183700 Sobic004G020600--Sobic004G331600 Sobic007G067900 Sobic007G067900 Sobic001G088400--Sobic007G067900 Sobic001G088400--Sobic002G113600 Sobic004G073800 Sobic004G073800 Sobic001G088400--Sobic004G073800 Sobic001G088400--Sobic009G192700 Sobic006G137300 Sobic006G137300 Sobic001G088400--Sobic006G137300 Sobic010G213000 Sobic010G213000 Sobic001G088400--Sobic010G213000 Sobic002G294300 Sobic002G294300 Sobic001G088400--Sobic002G294300 Sobic001G088400--Sobic005G164900 Sobic010G158832 Sobic010G158832 Sobic001G088400--Sobic010G158832
Octagon: transcription factors


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