Gene annotation
Transcriptome id Sobic.001G230300.1
Synonym Sb01g020170
Functional annotation shugoshin-1, putative, expressed
UniProt A0A1B6QKI4
Pfam PF07557
Panther DB PTHR34373 PTHR34373:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0000775chromosome, centromeric region


Orthologs (automatic annotation)
TAIR AT5G04320 : Shugoshin C terminus
RAP-DB (Rice) LOC_Os10g31930.1 : shugoshin-1, putative, expressed
MaizeGDB (Corn) Zm00025a014248 , Zm00025a006720
Brachypodium -
Barley HORVU4Hr1G005960.2 , HORVU4Hr1G005960.3 , HORVU4Hr1G005960.1 , HORVU4Hr1G005960.6 , HORVU4Hr1G005960.7 , HORVU4Hr1G005960.4 , HORVU4Hr1G005960.5 , HORVU4Hr1G005960.8 , HORVU4Hr1G005960.9 , HORVU1Hr1G038260.1 , HORVU1Hr1G038260.2 , HORVU1Hr1G038260.3 , HORVU1Hr1G038260.4 , HORVU1Hr1G038260.5 , HORVU1Hr1G038260.6 , HORVU1Hr1G038260.8 , HORVU1Hr1G038260.9 , HORVU4Hr1G005960.12 , HORVU4Hr1G005960.11 , HORVU4Hr1G005960.10 , HORVU1Hr1G038260.10 , HORVU1Hr1G038260.11 , HORVU1Hr1G038260.7
Wheat TraesCS1B02G161100 , TraesCS1A02G143700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G091500 expressed protein -
2 Sobic.003G387700 expressed protein -
3 Sobic.008G114900 rhoGAP domain containing protein, expressed -
4 Sobic.003G102000 expressed protein -
5 Sobic.004G339500 kinesin motor domain containing protein, putative, expressed -
6 Sobic.010G119300 expressed protein -
7 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
8 Sobic.008G125700 similar to F22D16.26 protein(PubMedID : 29862293)@CSLD4 - cellulose synthase-like family D, expressed K00770: 1,4-beta-D-xylan synthase
9 Sobic.002G222500 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
10 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
11 Sobic.009G120700 microtubule-binding protein TANGLED1, putative, expressed K18636: microtubule-binding protein TANGLED1
12 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.003G328500 Expressed in younger stem(PubMedID : 28649278)@cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
14 Sobic.007G219400 expressed protein -
15 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
16 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
17 Sobic.005G164900 expressed protein -
18 Sobic.001G496400 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
19 Sobic.007G017700 IQ calmodulin-binding motif domain containing protein, expressed -
20 Sobic.004G198100 expressed protein -


Gene co-expression network
sample Sobic001G230300 Sobic001G230300 Sobic001G091500 Sobic001G091500 Sobic001G230300--Sobic001G091500 Sobic003G387700 Sobic003G387700 Sobic001G230300--Sobic003G387700 Sobic008G114900 Sobic008G114900 Sobic001G230300--Sobic008G114900 Sobic003G102000 Sobic003G102000 Sobic001G230300--Sobic003G102000 Sobic004G339500 Sobic004G339500 Sobic001G230300--Sobic004G339500 Sobic010G119300 Sobic010G119300 Sobic001G230300--Sobic010G119300 Sobic003G260700 Sobic003G260700 Sobic001G230300--Sobic003G260700 Sobic008G125700 Sobic008G125700 Sobic001G230300--Sobic008G125700 Sobic002G222500 Sobic002G222500 Sobic001G230300--Sobic002G222500 Sobic002G426800 Sobic002G426800 Sobic001G091500--Sobic002G426800 Sobic001G091500--Sobic003G387700 Sobic009G120700 Sobic009G120700 Sobic001G091500--Sobic009G120700 Sobic001G091500--Sobic003G260700 Sobic004G047100 Sobic004G047100 Sobic001G091500--Sobic004G047100 Sobic001G091500--Sobic002G222500 Sobic001G091500--Sobic004G339500 Sobic001G091500--Sobic010G119300 Sobic004G198100 Sobic004G198100 Sobic001G091500--Sobic004G198100 Sobic004G257600 Sobic004G257600 Sobic003G387700--Sobic004G257600 Sobic006G134200 Sobic006G134200 Sobic003G387700--Sobic006G134200 Sobic010G105400 Sobic010G105400 Sobic003G387700--Sobic010G105400 Sobic003G387700--Sobic001G091500 Sobic001G105800 Sobic001G105800 Sobic003G387700--Sobic001G105800 Sobic003G387700--Sobic010G119300 Sobic001G398400 Sobic001G398400 Sobic003G387700--Sobic001G398400 Sobic003G328500 Sobic003G328500 Sobic003G387700--Sobic003G328500 Sobic007G100600 Sobic007G100600 Sobic003G387700--Sobic007G100600 Sobic008G114900--Sobic008G125700 Sobic002G313000 Sobic002G313000 Sobic008G114900--Sobic002G313000 Sobic001G155700 Sobic001G155700 Sobic008G114900--Sobic001G155700 Sobic008G114900--Sobic010G119300 Sobic006G219500 Sobic006G219500 Sobic008G114900--Sobic006G219500 Sobic002G319300 Sobic002G319300 Sobic008G114900--Sobic002G319300 Sobic008G114900--Sobic003G260700 Sobic001G493900 Sobic001G493900 Sobic008G114900--Sobic001G493900 Sobic008G006800 Sobic008G006800 Sobic008G114900--Sobic008G006800 Sobic003G102000--Sobic008G125700 Sobic003G102000--Sobic003G260700 Sobic003G102000--Sobic010G119300 Sobic003G102000--Sobic004G339500 Sobic003G102000--Sobic008G114900 Sobic003G102000--Sobic004G257600 Sobic003G102000--Sobic004G198100 Sobic003G102000--Sobic008G006800 Sobic003G102000--Sobic002G313000 Sobic004G339500--Sobic003G260700 Sobic004G339500--Sobic008G006800 Sobic001G170800 Sobic001G170800 Sobic004G339500--Sobic001G170800 Sobic001G177900 Sobic001G177900 Sobic004G339500--Sobic001G177900 Sobic004G339500--Sobic010G119300 Sobic004G339500--Sobic003G102000 Sobic004G339500--Sobic004G198100 Sobic004G339500--Sobic008G125700 Sobic005G005700 Sobic005G005700 Sobic004G339500--Sobic005G005700 Sobic010G119300--Sobic008G125700 Sobic010G119300--Sobic008G006800 Sobic010G119300--Sobic003G260700 Sobic010G119300--Sobic004G198100 Sobic010G119300--Sobic003G102000 Sobic010G119300--Sobic005G005700 Sobic010G119300--Sobic004G339500 Sobic010G119300--Sobic008G114900 Sobic010G119300--Sobic001G398400 Sobic003G260700--Sobic001G170800 Sobic003G260700--Sobic004G257600 Sobic003G260700--Sobic004G339500 Sobic003G260700--Sobic001G398400 Sobic003G260700--Sobic004G198100 Sobic004G271300 Sobic004G271300 Sobic003G260700--Sobic004G271300 Sobic003G260700--Sobic008G006800 Sobic003G260700--Sobic001G177900 Sobic003G260700--Sobic002G313000 Sobic008G125700--Sobic010G119300 Sobic008G125700--Sobic008G114900 Sobic008G125700--Sobic003G102000 Sobic008G125700--Sobic003G260700 Sobic008G125700--Sobic004G198100 Sobic008G125700--Sobic008G006800 Sobic008G125700--Sobic002G313000 Sobic008G125700--Sobic004G339500 Sobic005G199700 Sobic005G199700 Sobic008G125700--Sobic005G199700 Sobic002G222500--Sobic001G091500 Sobic002G222500--Sobic008G114900 Sobic010G269700 Sobic010G269700 Sobic002G222500--Sobic010G269700 Sobic002G222500--Sobic003G387700 Sobic010G241100 Sobic010G241100 Sobic002G222500--Sobic010G241100 Sobic003G444100 Sobic003G444100 Sobic002G222500--Sobic003G444100 Sobic004G313200 Sobic004G313200 Sobic002G222500--Sobic004G313200 Sobic002G222500--Sobic006G219500 Sobic003G032200 Sobic003G032200 Sobic002G222500--Sobic003G032200
Octagon: transcription factors


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