Gene annotation
Transcriptome id Sobic.005G164900.1
Synonym Sb05g022560
Functional annotation expressed protein
UniProt C5Y589
Pfam -
Panther DB PTHR12794 PTHR12794:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005681; spliceosomal complex GO:0000398mRNA splicing, via spliceosome GO:0000387spliceosomal snRNP assembly


Orthologs (automatic annotation)
TAIR AT1G54385 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os11g37100.1 : expressed protein
MaizeGDB (Corn) Zm00025a033895
Brachypodium -
Barley HORVU6Hr1G028190.1 , HORVU6Hr1G028190.2
Wheat TraesCS6D02G133300 , TraesCS6A02G144100 , TraesCS6B02G172500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G113600 rhoGAP domain containing protein, expressed -
2 Sobic.004G339500 kinesin motor domain containing protein, putative, expressed -
3 Sobic.008G114900 rhoGAP domain containing protein, expressed -
4 Sobic.003G008700 MYB family transcription factor, putative, expressed -
5 Sobic.006G215200 caltractin, putative, expressed -
6 Sobic.001G230300 shugoshin-1, putative, expressed -
7 Sobic.001G091500 expressed protein -
8 Sobic.008G006800 inactive receptor kinase At2g26730 precursor, putative, expressed -
9 Sobic.001G540200 PAIR1, putative, expressed -
10 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
11 Sobic.002G222500 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
12 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
13 Sobic.009G185900 expressed protein -
14 Sobic.008G125700 similar to F22D16.26 protein(PubMedID : 29862293)@CSLD4 - cellulose synthase-like family D, expressed K00770: 1,4-beta-D-xylan synthase
15 Sobic.001G088000 expressed protein -
16 Sobic.010G119300 expressed protein -
17 Sobic.010G017400 DLT(Ortholog in rice:Tong et al. (2012))(PubMedID : 31659927)@DELLA protein SLR1, putative, expressed -
18 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
19 Sobic.004G198100 expressed protein -
20 Sobic.002G313000 targeting protein-related, putative, expressed K16812: targeting protein for Xklp2


Gene co-expression network
sample Sobic005G164900 Sobic005G164900 Sobic002G113600 Sobic002G113600 Sobic005G164900--Sobic002G113600 Sobic004G339500 Sobic004G339500 Sobic005G164900--Sobic004G339500 Sobic008G114900 Sobic008G114900 Sobic005G164900--Sobic008G114900 Sobic003G008700 Sobic003G008700 Sobic005G164900--Sobic003G008700 Sobic006G215200 Sobic006G215200 Sobic005G164900--Sobic006G215200 Sobic001G230300 Sobic001G230300 Sobic005G164900--Sobic001G230300 Sobic001G091500 Sobic001G091500 Sobic005G164900--Sobic001G091500 Sobic008G006800 Sobic008G006800 Sobic005G164900--Sobic008G006800 Sobic001G540200 Sobic001G540200 Sobic005G164900--Sobic001G540200 Sobic002G113600--Sobic005G164900 Sobic002G113600--Sobic006G215200 Sobic008G093600 Sobic008G093600 Sobic002G113600--Sobic008G093600 Sobic002G113600--Sobic003G008700 Sobic002G224200 Sobic002G224200 Sobic002G113600--Sobic002G224200 Sobic002G113600--Sobic008G114900 Sobic002G113600--Sobic004G339500 Sobic007G168900 Sobic007G168900 Sobic002G113600--Sobic007G168900 Sobic003G043900 Sobic003G043900 Sobic002G113600--Sobic003G043900 Sobic003G260700 Sobic003G260700 Sobic004G339500--Sobic003G260700 Sobic004G339500--Sobic008G006800 Sobic001G170800 Sobic001G170800 Sobic004G339500--Sobic001G170800 Sobic001G177900 Sobic001G177900 Sobic004G339500--Sobic001G177900 Sobic010G119300 Sobic010G119300 Sobic004G339500--Sobic010G119300 Sobic003G102000 Sobic003G102000 Sobic004G339500--Sobic003G102000 Sobic004G198100 Sobic004G198100 Sobic004G339500--Sobic004G198100 Sobic008G125700 Sobic008G125700 Sobic004G339500--Sobic008G125700 Sobic005G005700 Sobic005G005700 Sobic004G339500--Sobic005G005700 Sobic008G114900--Sobic008G125700 Sobic002G313000 Sobic002G313000 Sobic008G114900--Sobic002G313000 Sobic001G155700 Sobic001G155700 Sobic008G114900--Sobic001G155700 Sobic008G114900--Sobic010G119300 Sobic006G219500 Sobic006G219500 Sobic008G114900--Sobic006G219500 Sobic002G319300 Sobic002G319300 Sobic008G114900--Sobic002G319300 Sobic008G114900--Sobic003G260700 Sobic001G493900 Sobic001G493900 Sobic008G114900--Sobic001G493900 Sobic008G114900--Sobic008G006800 Sobic003G008700--Sobic001G170800 Sobic004G047100 Sobic004G047100 Sobic003G008700--Sobic004G047100 Sobic009G184200 Sobic009G184200 Sobic003G008700--Sobic009G184200 Sobic005G000500 Sobic005G000500 Sobic003G008700--Sobic005G000500 Sobic005G110535 Sobic005G110535 Sobic003G008700--Sobic005G110535 Sobic010G105400 Sobic010G105400 Sobic003G008700--Sobic010G105400 Sobic008G148000 Sobic008G148000 Sobic003G008700--Sobic008G148000 Sobic003G444100 Sobic003G444100 Sobic003G008700--Sobic003G444100 Sobic001G398400 Sobic001G398400 Sobic003G008700--Sobic001G398400 Sobic006G215200--Sobic005G164900 Sobic006G215200--Sobic002G113600 Sobic001G352300 Sobic001G352300 Sobic006G215200--Sobic001G352300 Sobic004G020600 Sobic004G020600 Sobic006G215200--Sobic004G020600 Sobic002G142200 Sobic002G142200 Sobic006G215200--Sobic002G142200 Sobic010G017400 Sobic010G017400 Sobic006G215200--Sobic010G017400 Sobic010G008900 Sobic010G008900 Sobic006G215200--Sobic010G008900 Sobic006G215200--Sobic004G339500 Sobic006G215200--Sobic007G168900 Sobic001G230300--Sobic001G091500 Sobic003G387700 Sobic003G387700 Sobic001G230300--Sobic003G387700 Sobic001G230300--Sobic008G114900 Sobic001G230300--Sobic003G102000 Sobic001G230300--Sobic004G339500 Sobic001G230300--Sobic010G119300 Sobic001G230300--Sobic003G260700 Sobic001G230300--Sobic008G125700 Sobic002G222500 Sobic002G222500 Sobic001G230300--Sobic002G222500 Sobic002G426800 Sobic002G426800 Sobic001G091500--Sobic002G426800 Sobic001G091500--Sobic003G387700 Sobic009G120700 Sobic009G120700 Sobic001G091500--Sobic009G120700 Sobic001G091500--Sobic003G260700 Sobic001G091500--Sobic004G047100 Sobic001G091500--Sobic002G222500 Sobic001G091500--Sobic004G339500 Sobic001G091500--Sobic010G119300 Sobic001G091500--Sobic004G198100 Sobic008G006800--Sobic005G005700 Sobic008G006800--Sobic010G119300 Sobic008G006800--Sobic003G260700 Sobic008G006800--Sobic001G398400 Sobic008G006800--Sobic004G339500 Sobic008G006800--Sobic010G017400 Sobic004G271300 Sobic004G271300 Sobic008G006800--Sobic004G271300 Sobic008G006800--Sobic002G313000 Sobic002G296000 Sobic002G296000 Sobic008G006800--Sobic002G296000 Sobic001G540200--Sobic005G164900 Sobic009G185900 Sobic009G185900 Sobic001G540200--Sobic009G185900 Sobic001G540200--Sobic008G114900 Sobic001G320500 Sobic001G320500 Sobic001G540200--Sobic001G320500 Sobic003G084100 Sobic003G084100 Sobic001G540200--Sobic003G084100 Sobic005G034500 Sobic005G034500 Sobic001G540200--Sobic005G034500 Sobic001G540200--Sobic001G091500 Sobic007G180200 Sobic007G180200 Sobic001G540200--Sobic007G180200 Sobic009G146700 Sobic009G146700 Sobic001G540200--Sobic009G146700
Octagon: transcription factors


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