Gene annotation
Transcriptome id Sobic.002G222500.1
Synonym Sb02g026330, LYM1
Functional annotation lysM domain-containing GPI-anchored protein precursor, putative, expressed
UniProt C5X280
Pfam PF01476
Panther DB PTHR33734 PTHR33734:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21880 : lysm domain GPI-anchored protein 1 precursor
RAP-DB (Rice) LOC_Os09g27890.1 : lysM domain-containing GPI-anchored protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a047227
Brachypodium -
Barley HORVU5Hr1G067650.5 , HORVU5Hr1G067650.7 , HORVU5Hr1G067650.6 , HORVU5Hr1G067650.1 , HORVU5Hr1G067650.3 , HORVU5Hr1G067650.2 , HORVU5Hr1G067650.8 , HORVU5Hr1G067650.4
Wheat TraesCS5D02G241600 , TraesCS5A02G234700 , TraesCS5B02G233200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G091500 expressed protein -
2 Sobic.008G114900 rhoGAP domain containing protein, expressed -
3 Sobic.010G269700 expressed protein -
4 Sobic.003G387700 expressed protein -
5 Sobic.010G241100 thaumatin family domain containing protein, expressed -
6 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
7 Sobic.004G313200 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
8 Sobic.006G219500 remorin family protein, putative, expressed -
9 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
10 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
11 Sobic.003G102000 expressed protein -
12 Sobic.001G155700 expansin precursor, putative, expressed -
13 Sobic.002G313000 targeting protein-related, putative, expressed K16812: targeting protein for Xklp2
14 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
15 Sobic.010G129700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
16 Sobic.008G125700 similar to F22D16.26 protein(PubMedID : 29862293)@CSLD4 - cellulose synthase-like family D, expressed K00770: 1,4-beta-D-xylan synthase
17 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
18 Sobic.001G496400 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
19 Sobic.001G493900 beta-galactosidase, putative, expressed -
20 Sobic.004G339500 kinesin motor domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G222500 Sobic002G222500 Sobic001G091500 Sobic001G091500 Sobic002G222500--Sobic001G091500 Sobic008G114900 Sobic008G114900 Sobic002G222500--Sobic008G114900 Sobic010G269700 Sobic010G269700 Sobic002G222500--Sobic010G269700 Sobic003G387700 Sobic003G387700 Sobic002G222500--Sobic003G387700 Sobic010G241100 Sobic010G241100 Sobic002G222500--Sobic010G241100 Sobic003G444100 Sobic003G444100 Sobic002G222500--Sobic003G444100 Sobic004G313200 Sobic004G313200 Sobic002G222500--Sobic004G313200 Sobic006G219500 Sobic006G219500 Sobic002G222500--Sobic006G219500 Sobic003G032200 Sobic003G032200 Sobic002G222500--Sobic003G032200 Sobic002G426800 Sobic002G426800 Sobic001G091500--Sobic002G426800 Sobic001G091500--Sobic003G387700 Sobic009G120700 Sobic009G120700 Sobic001G091500--Sobic009G120700 Sobic003G260700 Sobic003G260700 Sobic001G091500--Sobic003G260700 Sobic004G047100 Sobic004G047100 Sobic001G091500--Sobic004G047100 Sobic001G091500--Sobic002G222500 Sobic004G339500 Sobic004G339500 Sobic001G091500--Sobic004G339500 Sobic010G119300 Sobic010G119300 Sobic001G091500--Sobic010G119300 Sobic004G198100 Sobic004G198100 Sobic001G091500--Sobic004G198100 Sobic008G125700 Sobic008G125700 Sobic008G114900--Sobic008G125700 Sobic002G313000 Sobic002G313000 Sobic008G114900--Sobic002G313000 Sobic001G155700 Sobic001G155700 Sobic008G114900--Sobic001G155700 Sobic008G114900--Sobic010G119300 Sobic008G114900--Sobic006G219500 Sobic002G319300 Sobic002G319300 Sobic008G114900--Sobic002G319300 Sobic008G114900--Sobic003G260700 Sobic001G493900 Sobic001G493900 Sobic008G114900--Sobic001G493900 Sobic008G006800 Sobic008G006800 Sobic008G114900--Sobic008G006800 Sobic006G274200 Sobic006G274200 Sobic010G269700--Sobic006G274200 Sobic003G019900 Sobic003G019900 Sobic010G269700--Sobic003G019900 Sobic010G269700--Sobic002G222500 Sobic003G373900 Sobic003G373900 Sobic010G269700--Sobic003G373900 Sobic010G092400 Sobic010G092400 Sobic010G269700--Sobic010G092400 Sobic010G086000 Sobic010G086000 Sobic010G269700--Sobic010G086000 Sobic003G002000 Sobic003G002000 Sobic010G269700--Sobic003G002000 Sobic005G020100 Sobic005G020100 Sobic010G269700--Sobic005G020100 Sobic010G269700--Sobic010G241100 Sobic004G257600 Sobic004G257600 Sobic003G387700--Sobic004G257600 Sobic006G134200 Sobic006G134200 Sobic003G387700--Sobic006G134200 Sobic010G105400 Sobic010G105400 Sobic003G387700--Sobic010G105400 Sobic003G387700--Sobic001G091500 Sobic001G105800 Sobic001G105800 Sobic003G387700--Sobic001G105800 Sobic003G387700--Sobic010G119300 Sobic001G398400 Sobic001G398400 Sobic003G387700--Sobic001G398400 Sobic003G328500 Sobic003G328500 Sobic003G387700--Sobic003G328500 Sobic007G100600 Sobic007G100600 Sobic003G387700--Sobic007G100600 Sobic010G192500 Sobic010G192500 Sobic010G241100--Sobic010G192500 Sobic010G241100--Sobic010G086000 Sobic010G241100--Sobic003G032200 Sobic002G337600 Sobic002G337600 Sobic010G241100--Sobic002G337600 Sobic002G394500 Sobic002G394500 Sobic010G241100--Sobic002G394500 Sobic010G241100--Sobic002G222500 Sobic010G023400 Sobic010G023400 Sobic010G241100--Sobic010G023400 Sobic001G452900 Sobic001G452900 Sobic010G241100--Sobic001G452900 Sobic007G160300 Sobic007G160300 Sobic010G241100--Sobic007G160300 Sobic005G000500 Sobic005G000500 Sobic003G444100--Sobic005G000500 Sobic001G170800 Sobic001G170800 Sobic003G444100--Sobic001G170800 Sobic003G444100--Sobic003G260700 Sobic007G168900 Sobic007G168900 Sobic003G444100--Sobic007G168900 Sobic001G177900 Sobic001G177900 Sobic003G444100--Sobic001G177900 Sobic003G444100--Sobic001G398400 Sobic003G444100--Sobic004G257600 Sobic003G314900 Sobic003G314900 Sobic003G444100--Sobic003G314900 Sobic003G444100--Sobic010G105400 Sobic001G083500 Sobic001G083500 Sobic004G313200--Sobic001G083500 Sobic004G313200--Sobic002G222500 Sobic001G108100 Sobic001G108100 Sobic004G313200--Sobic001G108100 Sobic001G140600 Sobic001G140600 Sobic004G313200--Sobic001G140600 Sobic009G146700 Sobic009G146700 Sobic004G313200--Sobic009G146700 Sobic003G102000 Sobic003G102000 Sobic004G313200--Sobic003G102000 Sobic004G313200--Sobic010G241100 Sobic004G313200--Sobic006G219500 Sobic007G116800 Sobic007G116800 Sobic004G313200--Sobic007G116800 Sobic006G219500--Sobic008G114900 Sobic006G219500--Sobic001G155700 Sobic006G219500--Sobic001G493900 Sobic010G129700 Sobic010G129700 Sobic006G219500--Sobic010G129700 Sobic006G219500--Sobic009G146700 Sobic006G219500--Sobic002G313000 Sobic006G219500--Sobic002G319300 Sobic006G219500--Sobic008G125700 Sobic001G496400 Sobic001G496400 Sobic006G219500--Sobic001G496400 Sobic009G184200 Sobic009G184200 Sobic003G032200--Sobic009G184200 Sobic003G032200--Sobic010G086000 Sobic003G032200--Sobic010G105400 Sobic003G032200--Sobic010G241100 Sobic009G172950 Sobic009G172950 Sobic003G032200--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic003G032200--Sobic006G142500 Sobic002G296000 Sobic002G296000 Sobic003G032200--Sobic002G296000 Sobic003G032200--Sobic003G444100 Sobic002G204400 Sobic002G204400 Sobic003G032200--Sobic002G204400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.