Gene annotation
Transcriptome id Sobic.004G020600.2
Synonym SDG34, Sb04g001900, ATXR6
Functional annotation ATXR, putative, expressed
UniProt D8L7Z8
Pfam PF00628
Panther DB PTHR10615 PTHR10615:SF112
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G24330 : ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6
RAP-DB (Rice) LOC_Os02g03030.1 : ATXR, putative, expressed
MaizeGDB (Corn) Zm00025a018776
Brachypodium KQJ93013
Barley HORVU6Hr1G011950.8 , HORVU6Hr1G011950.9 , HORVU6Hr1G011950.4 , HORVU6Hr1G011950.5 , HORVU6Hr1G011950.6 , HORVU6Hr1G011950.7 , HORVU6Hr1G011950.1 , HORVU6Hr1G011950.2 , HORVU6Hr1G011950.3 , HORVU6Hr1G011950.10
Wheat TraesCS6B02G088800 , TraesCSU02G120100 , TraesCS6A02G065800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
2 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
3 Sobic.004G355500 RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
4 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
5 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
6 Sobic.006G116500 expressed protein -
7 Sobic.003G361200 CDC6 - Putative DNA replication initiation protein, expressed K02213: cell division control protein 6
8 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
9 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
10 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
11 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
12 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
13 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5
14 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
15 Sobic.004G197400 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
16 Sobic.002G142200 expressed protein -
17 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
18 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
19 Sobic.002G272300 expressed protein -
20 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic004G020600 Sobic004G020600 Sobic009G087000 Sobic009G087000 Sobic004G020600--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic004G020600--Sobic010G147700 Sobic004G355500 Sobic004G355500 Sobic004G020600--Sobic004G355500 Sobic001G456500 Sobic001G456500 Sobic004G020600--Sobic001G456500 Sobic010G103700 Sobic010G103700 Sobic004G020600--Sobic010G103700 Sobic006G116500 Sobic006G116500 Sobic004G020600--Sobic006G116500 Sobic003G361200 Sobic003G361200 Sobic004G020600--Sobic003G361200 Sobic003G183700 Sobic003G183700 Sobic004G020600--Sobic003G183700 Sobic004G331600 Sobic004G331600 Sobic004G020600--Sobic004G331600 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic005G110535 Sobic005G110535 Sobic009G087000--Sobic005G110535 Sobic008G129200 Sobic008G129200 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic009G087000--Sobic004G331600 Sobic003G179500 Sobic003G179500 Sobic009G087000--Sobic003G179500 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic005G144600 Sobic005G144600 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic003G201000 Sobic003G201000 Sobic010G147700--Sobic003G201000 Sobic004G355500--Sobic006G116500 Sobic004G355500--Sobic001G456500 Sobic007G152900 Sobic007G152900 Sobic004G355500--Sobic007G152900 Sobic004G355500--Sobic010G103700 Sobic001G169800 Sobic001G169800 Sobic004G355500--Sobic001G169800 Sobic004G197400 Sobic004G197400 Sobic004G355500--Sobic004G197400 Sobic009G088200 Sobic009G088200 Sobic004G355500--Sobic009G088200 Sobic001G103000 Sobic001G103000 Sobic004G355500--Sobic001G103000 Sobic004G355500--Sobic008G129200 Sobic001G456500--Sobic006G116500 Sobic001G456500--Sobic004G331600 Sobic001G142000 Sobic001G142000 Sobic001G456500--Sobic001G142000 Sobic001G083300 Sobic001G083300 Sobic001G456500--Sobic001G083300 Sobic001G456500--Sobic008G129200 Sobic002G223900 Sobic002G223900 Sobic001G456500--Sobic002G223900 Sobic001G456500--Sobic001G169800 Sobic003G444300 Sobic003G444300 Sobic001G456500--Sobic003G444300 Sobic001G456500--Sobic004G355500 Sobic010G103700--Sobic003G183700 Sobic010G103700--Sobic003G179500 Sobic006G120600 Sobic006G120600 Sobic010G103700--Sobic006G120600 Sobic006G195500 Sobic006G195500 Sobic010G103700--Sobic006G195500 Sobic006G051000 Sobic006G051000 Sobic010G103700--Sobic006G051000 Sobic010G103700--Sobic009G087000 Sobic010G103700--Sobic010G147700 Sobic010G103700--Sobic006G116500 Sobic010G103700--Sobic004G355500 Sobic006G116500--Sobic001G456500 Sobic006G116500--Sobic004G355500 Sobic006G116500--Sobic001G169800 Sobic001G070300 Sobic001G070300 Sobic006G116500--Sobic001G070300 Sobic006G116500--Sobic003G179500 Sobic006G116500--Sobic008G129200 Sobic006G116500--Sobic002G223900 Sobic006G116500--Sobic004G331600 Sobic004G047100 Sobic004G047100 Sobic006G116500--Sobic004G047100 Sobic003G361200--Sobic008G129200 Sobic003G361200--Sobic001G456500 Sobic003G361200--Sobic004G331600 Sobic003G361200--Sobic009G087000 Sobic002G272300 Sobic002G272300 Sobic003G361200--Sobic002G272300 Sobic010G054600 Sobic010G054600 Sobic003G361200--Sobic010G054600 Sobic003G361200--Sobic001G142000 Sobic003G361200--Sobic010G147700 Sobic006G235600 Sobic006G235600 Sobic003G361200--Sobic006G235600 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic003G183700--Sobic006G195500 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic004G331600--Sobic010G054600 Sobic004G331600--Sobic009G087000 Sobic004G331600--Sobic001G142000 Sobic004G331600--Sobic002G223900 Sobic004G331600--Sobic003G183700 Sobic004G331600--Sobic010G147700 Sobic007G007800 Sobic007G007800 Sobic004G331600--Sobic007G007800
Octagon: transcription factors


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