Gene annotation
Transcriptome id Sobic.009G211100.1
Synonym Sb09g026705
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5Z1H5
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF888
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18485 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os12g15460.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a044352
Brachypodium KQJ91722
Barley HORVU2Hr1G120430.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G063800 HIRAN domain containing protein, putative, expressed -
2 Sobic.004G053100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.002G198801 - -
4 Sobic.010G138700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.008G120000 - -
6 Sobic.010G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.003G383200 expressed protein -
8 Sobic.010G088200 pentatricopeptide, putative, expressed -
9 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
10 Sobic.009G238700 EMB2744, putative, expressed -
11 Sobic.003G223300 chitinase domain-containing protein 1 precursor, putative, expressed K17525: chitinase domain-containing protein 1
12 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.006G218800 - -
14 Sobic.007G118400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
15 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
16 Sobic.009G136200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.008G111000 expressed protein -
18 Sobic.002G403700 condensin complex subunit 1, putative, expressed K06677: YCS4, CNAP1, condensin complex subunit 1
19 Sobic.001G527600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@radical SAM enzyme, putative, expressed K02495: hemN, oxygen-independent coproporphyrinogen III oxidase
20 Sobic.001G095800 XRCC4, putative, expressed K10886: DNA-repair protein XRCC4


Gene co-expression network
sample Sobic009G211100 Sobic009G211100 Sobic006G063800 Sobic006G063800 Sobic009G211100--Sobic006G063800 Sobic004G053100 Sobic004G053100 Sobic009G211100--Sobic004G053100 Sobic002G198801 Sobic002G198801 Sobic009G211100--Sobic002G198801 Sobic010G138700 Sobic010G138700 Sobic009G211100--Sobic010G138700 Sobic008G120000 Sobic008G120000 Sobic009G211100--Sobic008G120000 Sobic010G066900 Sobic010G066900 Sobic009G211100--Sobic010G066900 Sobic003G383200 Sobic003G383200 Sobic009G211100--Sobic003G383200 Sobic010G088200 Sobic010G088200 Sobic009G211100--Sobic010G088200 Sobic008G099900 Sobic008G099900 Sobic009G211100--Sobic008G099900 Sobic002G403700 Sobic002G403700 Sobic006G063800--Sobic002G403700 Sobic002G104600 Sobic002G104600 Sobic006G063800--Sobic002G104600 Sobic006G063800--Sobic003G383200 Sobic009G196900 Sobic009G196900 Sobic006G063800--Sobic009G196900 Sobic002G190400 Sobic002G190400 Sobic006G063800--Sobic002G190400 Sobic006G063800--Sobic009G211100 Sobic005G008400 Sobic005G008400 Sobic006G063800--Sobic005G008400 Sobic008G035633 Sobic008G035633 Sobic006G063800--Sobic008G035633 Sobic001G365332 Sobic001G365332 Sobic006G063800--Sobic001G365332 Sobic005G100500 Sobic005G100500 Sobic004G053100--Sobic005G100500 Sobic003G107000 Sobic003G107000 Sobic004G053100--Sobic003G107000 Sobic004G053100--Sobic002G403700 Sobic001G365266 Sobic001G365266 Sobic004G053100--Sobic001G365266 Sobic002G306500 Sobic002G306500 Sobic004G053100--Sobic002G306500 Sobic001G221601 Sobic001G221601 Sobic004G053100--Sobic001G221601 Sobic003G409500 Sobic003G409500 Sobic004G053100--Sobic003G409500 Sobic009G166650 Sobic009G166650 Sobic004G053100--Sobic009G166650 Sobic004G312000 Sobic004G312000 Sobic004G053100--Sobic004G312000 Sobic010G213000 Sobic010G213000 Sobic002G198801--Sobic010G213000 Sobic008G075100 Sobic008G075100 Sobic002G198801--Sobic008G075100 Sobic006G276900 Sobic006G276900 Sobic002G198801--Sobic006G276900 Sobic010G024500 Sobic010G024500 Sobic002G198801--Sobic010G024500 Sobic003G352100 Sobic003G352100 Sobic002G198801--Sobic003G352100 Sobic002G198801--Sobic009G211100 Sobic008G113300 Sobic008G113300 Sobic002G198801--Sobic008G113300 Sobic004G359500 Sobic004G359500 Sobic002G198801--Sobic004G359500 Sobic009G238700 Sobic009G238700 Sobic002G198801--Sobic009G238700 Sobic003G204100 Sobic003G204100 Sobic010G138700--Sobic003G204100 Sobic009G160700 Sobic009G160700 Sobic010G138700--Sobic009G160700 Sobic008G095900 Sobic008G095900 Sobic010G138700--Sobic008G095900 Sobic010G147500 Sobic010G147500 Sobic010G138700--Sobic010G147500 Sobic008G047500 Sobic008G047500 Sobic010G138700--Sobic008G047500 Sobic010G123100 Sobic010G123100 Sobic010G138700--Sobic010G123100 Sobic010G038200 Sobic010G038200 Sobic010G138700--Sobic010G038200 Sobic001G478900 Sobic001G478900 Sobic010G138700--Sobic001G478900 Sobic004G215600 Sobic004G215600 Sobic010G138700--Sobic004G215600 Sobic006G218800 Sobic006G218800 Sobic008G120000--Sobic006G218800 Sobic004G112800 Sobic004G112800 Sobic008G120000--Sobic004G112800 Sobic005G008500 Sobic005G008500 Sobic008G120000--Sobic005G008500 Sobic003G089700 Sobic003G089700 Sobic008G120000--Sobic003G089700 Sobic008G120000--Sobic009G211100 Sobic002G416250 Sobic002G416250 Sobic008G120000--Sobic002G416250 Sobic001G095800 Sobic001G095800 Sobic008G120000--Sobic001G095800 Sobic003G156800 Sobic003G156800 Sobic008G120000--Sobic003G156800 Sobic006G138600 Sobic006G138600 Sobic008G120000--Sobic006G138600 Sobic001G149100 Sobic001G149100 Sobic010G066900--Sobic001G149100 Sobic004G176500 Sobic004G176500 Sobic010G066900--Sobic004G176500 Sobic010G066900--Sobic009G238700 Sobic008G163400 Sobic008G163400 Sobic010G066900--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic010G066900--Sobic004G241000 Sobic003G299200 Sobic003G299200 Sobic010G066900--Sobic003G299200 Sobic003G239000 Sobic003G239000 Sobic010G066900--Sobic003G239000 Sobic001G347100 Sobic001G347100 Sobic010G066900--Sobic001G347100 Sobic007G123100 Sobic007G123100 Sobic010G066900--Sobic007G123100 Sobic005G057201 Sobic005G057201 Sobic003G383200--Sobic005G057201 Sobic001G059150 Sobic001G059150 Sobic003G383200--Sobic001G059150 Sobic003G200400 Sobic003G200400 Sobic003G383200--Sobic003G200400 Sobic003G159300 Sobic003G159300 Sobic003G383200--Sobic003G159300 Sobic006G145650 Sobic006G145650 Sobic003G383200--Sobic006G145650 Sobic004G013900 Sobic004G013900 Sobic003G383200--Sobic004G013900 Sobic001G234733 Sobic001G234733 Sobic003G383200--Sobic001G234733 Sobic003G383200--Sobic005G008400 Sobic010G214950 Sobic010G214950 Sobic003G383200--Sobic010G214950 Sobic010G088200--Sobic001G478900 Sobic002G172500 Sobic002G172500 Sobic010G088200--Sobic002G172500 Sobic008G082800 Sobic008G082800 Sobic010G088200--Sobic008G082800 Sobic004G199400 Sobic004G199400 Sobic010G088200--Sobic004G199400 Sobic004G256900 Sobic004G256900 Sobic010G088200--Sobic004G256900 Sobic003G142400 Sobic003G142400 Sobic010G088200--Sobic003G142400 Sobic010G088200--Sobic010G066900 Sobic004G141600 Sobic004G141600 Sobic010G088200--Sobic004G141600 Sobic003G184300 Sobic003G184300 Sobic010G088200--Sobic003G184300 Sobic005G210700 Sobic005G210700 Sobic008G099900--Sobic005G210700 Sobic006G085900 Sobic006G085900 Sobic008G099900--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic008G099900--Sobic009G155400 Sobic002G251800 Sobic002G251800 Sobic008G099900--Sobic002G251800 Sobic004G217900 Sobic004G217900 Sobic008G099900--Sobic004G217900 Sobic006G109400 Sobic006G109400 Sobic008G099900--Sobic006G109400 Sobic009G116400 Sobic009G116400 Sobic008G099900--Sobic009G116400 Sobic007G179600 Sobic007G179600 Sobic008G099900--Sobic007G179600 Sobic006G271900 Sobic006G271900 Sobic008G099900--Sobic006G271900
Octagon: transcription factors


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