Gene annotation
Transcriptome id Sobic.003G223300.1
Synonym Sb03g028160
Functional annotation chitinase domain-containing protein 1 precursor, putative, expressed
UniProt A0A1B6Q4T2
Pfam PF00704
Panther DB PTHR11177
NCBI CDD KOG2091; Predicted member of glycosyl hydrolase family 18
KEGG Orthology K17525; chitinase domain-containing protein 1
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT4G01040 : Glycosyl hydrolase superfamily protein
RAP-DB (Rice) LOC_Os01g43220.1 : chitinase domain-containing protein 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a038553 , Zm00025a044797
Brachypodium KQK08764 , KQK08766 , KQK08767 , PNT72404
Barley HORVU3Hr1G055200.1 , HORVU3Hr1G055200.3 , HORVU3Hr1G055200.2 , HORVU3Hr1G055200.5 , HORVU3Hr1G055200.4 , HORVU3Hr1G055200.7 , HORVU3Hr1G055200.6 , HORVU3Hr1G055200.9 , HORVU3Hr1G055200.8
Wheat TraesCS3A02G223700 , TraesCS3B02G253200 , TraesCS3D02G229800 , TraesCS3D02G229800
Populus -


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cDNA sequences
Sobic.003G223300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G228600 spo0B-associated GTP-binding protein, putative, expressed -
2 Sobic.010G038600 expressed protein -
3 Sobic.002G190400 ZOS9-05 - C2H2 zinc finger protein, expressed -
4 Sobic.005G056500 integrator complex subunit 3, putative, expressed K13140: integrator complex subunit 3
5 Sobic.004G070100 exostosin family domain containing protein, expressed -
6 Sobic.003G050700 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
7 Sobic.005G156450 - -
8 Sobic.001G098100 cyclin, putative, expressed K06634: cyclin H
9 Sobic.010G249900 pentatricopeptide, putative, expressed -
10 Sobic.003G224900 - -
11 Sobic.003G354500 methyltransferase, putative, expressed -
12 Sobic.010G241450 - -
13 Sobic.001G332933 - -
14 Sobic.009G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.006G138600 DIE2/ALG10 family, putative, expressed K03850: alpha-1,2-glucosyltransferase
16 Sobic.007G118400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
17 Sobic.008G057200 amino acid transporter, putative, expressed -
18 Sobic.007G072600 OsFBX274 - F-box domain containing protein, expressed -
19 Sobic.006G027200 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.K031500 ATP binding protein, putative, expressed K17592: sacsin


Gene co-expression network
sample Sobic003G223300 Sobic003G223300 Sobic005G228600 Sobic005G228600 Sobic003G223300--Sobic005G228600 Sobic010G038600 Sobic010G038600 Sobic003G223300--Sobic010G038600 Sobic002G190400 Sobic002G190400 Sobic003G223300--Sobic002G190400 Sobic005G056500 Sobic005G056500 Sobic003G223300--Sobic005G056500 Sobic004G070100 Sobic004G070100 Sobic003G223300--Sobic004G070100 Sobic003G050700 Sobic003G050700 Sobic003G223300--Sobic003G050700 Sobic005G156450 Sobic005G156450 Sobic003G223300--Sobic005G156450 Sobic001G098100 Sobic001G098100 Sobic003G223300--Sobic001G098100 Sobic010G249900 Sobic010G249900 Sobic003G223300--Sobic010G249900 Sobic006G093550 Sobic006G093550 Sobic005G228600--Sobic006G093550 Sobic002G322101 Sobic002G322101 Sobic005G228600--Sobic002G322101 Sobic010G133225 Sobic010G133225 Sobic005G228600--Sobic010G133225 Sobic006G147350 Sobic006G147350 Sobic005G228600--Sobic006G147350 Sobic001G249900 Sobic001G249900 Sobic005G228600--Sobic001G249900 Sobic007G149750 Sobic007G149750 Sobic005G228600--Sobic007G149750 Sobic003G288500 Sobic003G288500 Sobic005G228600--Sobic003G288500 Sobic003G255850 Sobic003G255850 Sobic005G228600--Sobic003G255850 Sobic008G024900 Sobic008G024900 Sobic005G228600--Sobic008G024900 Sobic010G038600--Sobic005G056500 Sobic003G326500 Sobic003G326500 Sobic010G038600--Sobic003G326500 Sobic010G038600--Sobic003G050700 Sobic010G038600--Sobic003G223300 Sobic005G008600 Sobic005G008600 Sobic010G038600--Sobic005G008600 Sobic001G503200 Sobic001G503200 Sobic010G038600--Sobic001G503200 Sobic010G038600--Sobic001G098100 Sobic003G183466 Sobic003G183466 Sobic010G038600--Sobic003G183466 Sobic002G236500 Sobic002G236500 Sobic010G038600--Sobic002G236500 Sobic005G124500 Sobic005G124500 Sobic002G190400--Sobic005G124500 Sobic003G118650 Sobic003G118650 Sobic002G190400--Sobic003G118650 SobicK031500 SobicK031500 Sobic002G190400--SobicK031500 Sobic002G104600 Sobic002G104600 Sobic002G190400--Sobic002G104600 Sobic006G143800 Sobic006G143800 Sobic002G190400--Sobic006G143800 Sobic001G134900 Sobic001G134900 Sobic002G190400--Sobic001G134900 Sobic002G002000 Sobic002G002000 Sobic002G190400--Sobic002G002000 Sobic005G057750 Sobic005G057750 Sobic002G190400--Sobic005G057750 Sobic009G220600 Sobic009G220600 Sobic002G190400--Sobic009G220600 Sobic005G056500--Sobic001G098100 Sobic005G056500--Sobic010G038600 Sobic005G040500 Sobic005G040500 Sobic005G056500--Sobic005G040500 Sobic008G038400 Sobic008G038400 Sobic005G056500--Sobic008G038400 Sobic005G056500--Sobic003G223300 Sobic003G151200 Sobic003G151200 Sobic005G056500--Sobic003G151200 Sobic005G056500--Sobic003G050700 Sobic004G330000 Sobic004G330000 Sobic005G056500--Sobic004G330000 Sobic005G150600 Sobic005G150600 Sobic005G056500--Sobic005G150600 Sobic003G354500 Sobic003G354500 Sobic004G070100--Sobic003G354500 Sobic010G123100 Sobic010G123100 Sobic004G070100--Sobic010G123100 Sobic004G353300 Sobic004G353300 Sobic004G070100--Sobic004G353300 Sobic008G047500 Sobic008G047500 Sobic004G070100--Sobic008G047500 Sobic007G096800 Sobic007G096800 Sobic004G070100--Sobic007G096800 Sobic003G359400 Sobic003G359400 Sobic004G070100--Sobic003G359400 Sobic003G204100 Sobic003G204100 Sobic004G070100--Sobic003G204100 Sobic010G038200 Sobic010G038200 Sobic004G070100--Sobic010G038200 Sobic004G000400 Sobic004G000400 Sobic004G070100--Sobic004G000400 Sobic005G160200 Sobic005G160200 Sobic003G050700--Sobic005G160200 Sobic003G411700 Sobic003G411700 Sobic003G050700--Sobic003G411700 Sobic007G221700 Sobic007G221700 Sobic003G050700--Sobic007G221700 Sobic010G222800 Sobic010G222800 Sobic003G050700--Sobic010G222800 Sobic003G050700--Sobic007G096800 Sobic004G278900 Sobic004G278900 Sobic003G050700--Sobic004G278900 Sobic003G343200 Sobic003G343200 Sobic003G050700--Sobic003G343200 Sobic006G184200 Sobic006G184200 Sobic003G050700--Sobic006G184200 Sobic010G187900 Sobic010G187900 Sobic003G050700--Sobic010G187900 Sobic001G332933 Sobic001G332933 Sobic005G156450--Sobic001G332933 Sobic003G204750 Sobic003G204750 Sobic005G156450--Sobic003G204750 Sobic009G087480 Sobic009G087480 Sobic005G156450--Sobic009G087480 Sobic002G276500 Sobic002G276500 Sobic005G156450--Sobic002G276500 Sobic001G488300 Sobic001G488300 Sobic005G156450--Sobic001G488300 Sobic001G027900 Sobic001G027900 Sobic005G156450--Sobic001G027900 Sobic005G156450--Sobic008G024900 Sobic010G103400 Sobic010G103400 Sobic005G156450--Sobic010G103400 Sobic006G027200 Sobic006G027200 Sobic005G156450--Sobic006G027200 Sobic006G138600 Sobic006G138600 Sobic001G098100--Sobic006G138600 Sobic001G098100--Sobic005G056500 Sobic001G176700 Sobic001G176700 Sobic001G098100--Sobic001G176700 Sobic001G098100--Sobic006G027200 Sobic001G098100--Sobic010G038600 Sobic007G118400 Sobic007G118400 Sobic001G098100--Sobic007G118400 Sobic001G098100--Sobic005G040500 Sobic001G098100--Sobic003G223300 Sobic010G125700 Sobic010G125700 Sobic001G098100--Sobic010G125700 Sobic004G054600 Sobic004G054600 Sobic010G249900--Sobic004G054600 Sobic007G016400 Sobic007G016400 Sobic010G249900--Sobic007G016400 Sobic010G249900--Sobic001G332933 Sobic006G102200 Sobic006G102200 Sobic010G249900--Sobic006G102200 Sobic003G398500 Sobic003G398500 Sobic010G249900--Sobic003G398500 Sobic001G520600 Sobic001G520600 Sobic010G249900--Sobic001G520600 Sobic004G208800 Sobic004G208800 Sobic010G249900--Sobic004G208800 Sobic010G249900--Sobic006G143800 Sobic007G107800 Sobic007G107800 Sobic010G249900--Sobic007G107800
Octagon: transcription factors


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