Gene annotation
Transcriptome id Sobic.010G249900.1,Sobic.010G249900.2,Sobic.010G249900.4,Sobic.010G249900.3
Synonym Sb10g028820
Functional annotation pentatricopeptide, putative, expressed
UniProt C5Z8V9
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF432
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11310 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g32170.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a018349
Brachypodium PNT67896 , PNT67895 , PNT67898 , KQJ97813 , KQJ97812 , PNT67897
Barley HORVU0Hr1G035840.2 , HORVU0Hr1G035840.1 , HORVU0Hr1G035840.4 , HORVU0Hr1G035840.5 , HORVU5Hr1G012070.1 , HORVU0Hr1G035840.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G054600 porphobilinogen deaminase, chloroplast precursor, putative, expressed -
2 Sobic.007G016400 expressed protein -
3 Sobic.001G332933 - -
4 Sobic.006G102200 GPI transamidase component family protein, putative, expressed -
5 Sobic.003G398500 Uncharacterized ACR, COG1565 containing protein, putative, expressed -
6 Sobic.001G520600 DNA topoisomerase 2, putative, expressed -
7 Sobic.004G208800 expressed protein -
8 Sobic.006G143800 - -
9 Sobic.007G107800 expressed protein -
10 Sobic.006G244200 OsFBDUF42 - F-box and DUF domain containing protein, expressed -
11 Sobic.004G145550 - -
12 Sobic.007G070100 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
13 Sobic.002G190400 ZOS9-05 - C2H2 zinc finger protein, expressed -
14 Sobic.004G208301 - K15429: TRM5, tRNA (guanine37-N1)-methyltransferase
15 Sobic.004G015600 - -
16 Sobic.006G111800 expressed protein K14827: IPI1, pre-rRNA-processing protein IPI1
17 Sobic.001G411500 expressed protein -
18 Sobic.009G128400 peptide-N4-asparagine amidase A, putative, expressed -
19 Sobic.006G183500 methyltransferase, putative, expressed -
20 Sobic.003G107000 receptor-like protein kinase precursor, putative, expressed -


Gene co-expression network
sample Sobic010G249900 Sobic010G249900 Sobic004G054600 Sobic004G054600 Sobic010G249900--Sobic004G054600 Sobic007G016400 Sobic007G016400 Sobic010G249900--Sobic007G016400 Sobic001G332933 Sobic001G332933 Sobic010G249900--Sobic001G332933 Sobic006G102200 Sobic006G102200 Sobic010G249900--Sobic006G102200 Sobic003G398500 Sobic003G398500 Sobic010G249900--Sobic003G398500 Sobic001G520600 Sobic001G520600 Sobic010G249900--Sobic001G520600 Sobic004G208800 Sobic004G208800 Sobic010G249900--Sobic004G208800 Sobic006G143800 Sobic006G143800 Sobic010G249900--Sobic006G143800 Sobic007G107800 Sobic007G107800 Sobic010G249900--Sobic007G107800 Sobic004G054600--Sobic010G249900 Sobic004G054600--Sobic007G107800 Sobic001G095100 Sobic001G095100 Sobic004G054600--Sobic001G095100 Sobic004G145550 Sobic004G145550 Sobic004G054600--Sobic004G145550 Sobic001G454700 Sobic001G454700 Sobic004G054600--Sobic001G454700 Sobic001G395600 Sobic001G395600 Sobic004G054600--Sobic001G395600 Sobic009G128400 Sobic009G128400 Sobic004G054600--Sobic009G128400 Sobic001G462300 Sobic001G462300 Sobic004G054600--Sobic001G462300 Sobic005G021400 Sobic005G021400 Sobic004G054600--Sobic005G021400 Sobic007G016400--Sobic010G249900 Sobic007G016400--Sobic006G102200 Sobic006G244200 Sobic006G244200 Sobic007G016400--Sobic006G244200 Sobic007G016400--Sobic004G145550 Sobic006G183500 Sobic006G183500 Sobic007G016400--Sobic006G183500 Sobic002G375200 Sobic002G375200 Sobic007G016400--Sobic002G375200 Sobic003G047400 Sobic003G047400 Sobic007G016400--Sobic003G047400 Sobic010G093200 Sobic010G093200 Sobic007G016400--Sobic010G093200 Sobic005G106700 Sobic005G106700 Sobic007G016400--Sobic005G106700 Sobic005G156450 Sobic005G156450 Sobic001G332933--Sobic005G156450 Sobic001G332933--Sobic007G107800 Sobic001G332933--Sobic003G047400 Sobic002G276500 Sobic002G276500 Sobic001G332933--Sobic002G276500 Sobic003G204750 Sobic003G204750 Sobic001G332933--Sobic003G204750 Sobic009G087480 Sobic009G087480 Sobic001G332933--Sobic009G087480 Sobic003G290200 Sobic003G290200 Sobic001G332933--Sobic003G290200 Sobic007G070100 Sobic007G070100 Sobic001G332933--Sobic007G070100 Sobic001G332933--Sobic006G183500 Sobic005G118900 Sobic005G118900 Sobic006G102200--Sobic005G118900 Sobic005G104900 Sobic005G104900 Sobic006G102200--Sobic005G104900 Sobic003G053100 Sobic003G053100 Sobic006G102200--Sobic003G053100 Sobic005G139900 Sobic005G139900 Sobic006G102200--Sobic005G139900 Sobic003G172600 Sobic003G172600 Sobic006G102200--Sobic003G172600 Sobic003G173116 Sobic003G173116 Sobic006G102200--Sobic003G173116 Sobic003G169200 Sobic003G169200 Sobic006G102200--Sobic003G169200 Sobic001G230050 Sobic001G230050 Sobic006G102200--Sobic001G230050 Sobic003G159101 Sobic003G159101 Sobic006G102200--Sobic003G159101 Sobic001G411500 Sobic001G411500 Sobic003G398500--Sobic001G411500 Sobic003G398500--Sobic004G208800 Sobic003G398500--Sobic010G249900 Sobic003G398500--Sobic007G107800 Sobic005G100500 Sobic005G100500 Sobic003G398500--Sobic005G100500 Sobic001G444200 Sobic001G444200 Sobic003G398500--Sobic001G444200 Sobic008G014400 Sobic008G014400 Sobic003G398500--Sobic008G014400 Sobic004G312000 Sobic004G312000 Sobic003G398500--Sobic004G312000 Sobic004G053100 Sobic004G053100 Sobic003G398500--Sobic004G053100 Sobic001G520600--Sobic004G145550 Sobic001G520600--Sobic010G093200 Sobic001G123400 Sobic001G123400 Sobic001G520600--Sobic001G123400 Sobic001G520600--Sobic006G244200 Sobic001G520600--Sobic006G143800 Sobic007G009900 Sobic007G009900 Sobic001G520600--Sobic007G009900 Sobic003G384750 Sobic003G384750 Sobic001G520600--Sobic003G384750 Sobic008G057200 Sobic008G057200 Sobic001G520600--Sobic008G057200 Sobic010G103400 Sobic010G103400 Sobic001G520600--Sobic010G103400 Sobic004G208800--Sobic001G444200 Sobic004G208800--Sobic008G014400 Sobic005G070901 Sobic005G070901 Sobic004G208800--Sobic005G070901 Sobic003G032301 Sobic003G032301 Sobic004G208800--Sobic003G032301 Sobic004G208800--Sobic001G395600 Sobic001G141200 Sobic001G141200 Sobic004G208800--Sobic001G141200 Sobic006G206600 Sobic006G206600 Sobic004G208800--Sobic006G206600 Sobic004G208800--Sobic002G375200 Sobic004G208800--Sobic007G107800 Sobic003G288500 Sobic003G288500 Sobic006G143800--Sobic003G288500 Sobic003G119750 Sobic003G119750 Sobic006G143800--Sobic003G119750 Sobic003G354166 Sobic003G354166 Sobic006G143800--Sobic003G354166 Sobic001G293900 Sobic001G293900 Sobic006G143800--Sobic001G293900 Sobic006G192600 Sobic006G192600 Sobic006G143800--Sobic006G192600 Sobic008G157700 Sobic008G157700 Sobic006G143800--Sobic008G157700 Sobic002G002000 Sobic002G002000 Sobic006G143800--Sobic002G002000 Sobic003G168800 Sobic003G168800 Sobic006G143800--Sobic003G168800 Sobic007G004750 Sobic007G004750 Sobic006G143800--Sobic007G004750 Sobic004G157050 Sobic004G157050 Sobic007G107800--Sobic004G157050 Sobic004G207800 Sobic004G207800 Sobic007G107800--Sobic004G207800 Sobic009G192200 Sobic009G192200 Sobic007G107800--Sobic009G192200 Sobic007G113566 Sobic007G113566 Sobic007G107800--Sobic007G113566 Sobic007G107800--Sobic003G290200 Sobic010G002301 Sobic010G002301 Sobic007G107800--Sobic010G002301 Sobic007G107800--Sobic001G332933 Sobic008G171200 Sobic008G171200 Sobic007G107800--Sobic008G171200 Sobic007G085900 Sobic007G085900 Sobic007G107800--Sobic007G085900
Octagon: transcription factors


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