Gene annotation
Transcriptome id Sobic.003G398500.3,Sobic.003G398500.2
Synonym Sb03g043510
Functional annotation Uncharacterized ACR, COG1565 containing protein, putative, expressed
UniProt A0A1W0W156 , A0A1W0W133
Pfam PF02636
Panther DB PTHR12049 PTHR12049:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G04900 : Protein of unknown function (DUF185)
RAP-DB (Rice) LOC_Os01g68390.1 : Uncharacterized ACR, COG1565 containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026324
Brachypodium PNT73437 , PNT73436
Barley HORVU3Hr1G092770.13 , HORVU3Hr1G092770.10 , HORVU3Hr1G092770.11 , HORVU3Hr1G092770.14 , HORVU3Hr1G092770.15 , HORVU3Hr1G092770.1 , HORVU3Hr1G092770.12 , HORVU3Hr1G092770.2 , HORVU3Hr1G092770.3 , HORVU3Hr1G092770.4 , HORVU3Hr1G092770.5 , HORVU3Hr1G092770.8 , HORVU3Hr1G092770.9 , HORVU3Hr1G092770.6 , HORVU3Hr1G092770.7
Wheat TraesCS3B02G452900 , TraesCS3B02G452900 , TraesCS3D02G413300 , TraesCS3A02G417700 , TraesCS3A02G417700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G398500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G411500 expressed protein -
2 Sobic.004G208800 expressed protein -
3 Sobic.010G249900 pentatricopeptide, putative, expressed -
4 Sobic.007G107800 expressed protein -
5 Sobic.005G100500 RNA polymerase subunit, putative, expressed K03020: RPC19, DNA-directed RNA polymerases I and III subunit RPAC2
6 Sobic.001G444200 pentatricopeptide, putative, expressed -
7 Sobic.008G014400 expressed protein -
8 Sobic.004G312000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
9 Sobic.004G053100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.001G026400 expressed protein K15446: TRM13, tRNA:m4X modification enzyme
11 Sobic.004G054600 porphobilinogen deaminase, chloroplast precursor, putative, expressed -
12 Sobic.001G332933 - -
13 Sobic.002G375200 expressed protein -
14 Sobic.005G005300 expressed protein -
15 Sobic.004G145550 - -
16 Sobic.006G244200 OsFBDUF42 - F-box and DUF domain containing protein, expressed -
17 Sobic.007G016400 expressed protein -
18 Sobic.001G520600 DNA topoisomerase 2, putative, expressed -
19 Sobic.001G141200 ADP-ribosylation factor, putative, expressed K07943: ADP-ribosylation factor-like protein 2
20 Sobic.009G212900 myosin head family protein, expressed K10357: myosin V


Gene co-expression network
sample Sobic003G398500 Sobic003G398500 Sobic001G411500 Sobic001G411500 Sobic003G398500--Sobic001G411500 Sobic004G208800 Sobic004G208800 Sobic003G398500--Sobic004G208800 Sobic010G249900 Sobic010G249900 Sobic003G398500--Sobic010G249900 Sobic007G107800 Sobic007G107800 Sobic003G398500--Sobic007G107800 Sobic005G100500 Sobic005G100500 Sobic003G398500--Sobic005G100500 Sobic001G444200 Sobic001G444200 Sobic003G398500--Sobic001G444200 Sobic008G014400 Sobic008G014400 Sobic003G398500--Sobic008G014400 Sobic004G312000 Sobic004G312000 Sobic003G398500--Sobic004G312000 Sobic004G053100 Sobic004G053100 Sobic003G398500--Sobic004G053100 Sobic001G411500--Sobic007G107800 Sobic004G268600 Sobic004G268600 Sobic001G411500--Sobic004G268600 Sobic004G104200 Sobic004G104200 Sobic001G411500--Sobic004G104200 Sobic004G208301 Sobic004G208301 Sobic001G411500--Sobic004G208301 Sobic003G119750 Sobic003G119750 Sobic001G411500--Sobic003G119750 Sobic001G128000 Sobic001G128000 Sobic001G411500--Sobic001G128000 Sobic009G192200 Sobic009G192200 Sobic001G411500--Sobic009G192200 Sobic007G085900 Sobic007G085900 Sobic001G411500--Sobic007G085900 Sobic003G337200 Sobic003G337200 Sobic001G411500--Sobic003G337200 Sobic004G208800--Sobic001G444200 Sobic004G208800--Sobic008G014400 Sobic005G070901 Sobic005G070901 Sobic004G208800--Sobic005G070901 Sobic003G032301 Sobic003G032301 Sobic004G208800--Sobic003G032301 Sobic001G395600 Sobic001G395600 Sobic004G208800--Sobic001G395600 Sobic001G141200 Sobic001G141200 Sobic004G208800--Sobic001G141200 Sobic006G206600 Sobic006G206600 Sobic004G208800--Sobic006G206600 Sobic002G375200 Sobic002G375200 Sobic004G208800--Sobic002G375200 Sobic004G208800--Sobic007G107800 Sobic004G054600 Sobic004G054600 Sobic010G249900--Sobic004G054600 Sobic007G016400 Sobic007G016400 Sobic010G249900--Sobic007G016400 Sobic001G332933 Sobic001G332933 Sobic010G249900--Sobic001G332933 Sobic006G102200 Sobic006G102200 Sobic010G249900--Sobic006G102200 Sobic010G249900--Sobic003G398500 Sobic001G520600 Sobic001G520600 Sobic010G249900--Sobic001G520600 Sobic010G249900--Sobic004G208800 Sobic006G143800 Sobic006G143800 Sobic010G249900--Sobic006G143800 Sobic010G249900--Sobic007G107800 Sobic004G157050 Sobic004G157050 Sobic007G107800--Sobic004G157050 Sobic004G207800 Sobic004G207800 Sobic007G107800--Sobic004G207800 Sobic007G107800--Sobic009G192200 Sobic007G113566 Sobic007G113566 Sobic007G107800--Sobic007G113566 Sobic003G290200 Sobic003G290200 Sobic007G107800--Sobic003G290200 Sobic010G002301 Sobic010G002301 Sobic007G107800--Sobic010G002301 Sobic007G107800--Sobic001G332933 Sobic008G171200 Sobic008G171200 Sobic007G107800--Sobic008G171200 Sobic007G107800--Sobic007G085900 Sobic006G108500 Sobic006G108500 Sobic005G100500--Sobic006G108500 Sobic003G409500 Sobic003G409500 Sobic005G100500--Sobic003G409500 Sobic005G100500--Sobic007G107800 Sobic010G267300 Sobic010G267300 Sobic005G100500--Sobic010G267300 Sobic005G100500--Sobic001G395600 Sobic009G218700 Sobic009G218700 Sobic005G100500--Sobic009G218700 Sobic004G015600 Sobic004G015600 Sobic005G100500--Sobic004G015600 Sobic005G100500--Sobic007G113566 Sobic005G100500--Sobic004G157050 Sobic007G160050 Sobic007G160050 Sobic001G444200--Sobic007G160050 Sobic003G384750 Sobic003G384750 Sobic001G444200--Sobic003G384750 Sobic001G444200--Sobic004G208800 Sobic001G159500 Sobic001G159500 Sobic001G444200--Sobic001G159500 Sobic001G201933 Sobic001G201933 Sobic001G444200--Sobic001G201933 Sobic003G047400 Sobic003G047400 Sobic001G444200--Sobic003G047400 Sobic004G145550 Sobic004G145550 Sobic001G444200--Sobic004G145550 Sobic001G444200--Sobic001G395600 Sobic003G139600 Sobic003G139600 Sobic001G444200--Sobic003G139600 Sobic008G014400--Sobic002G375200 Sobic008G014400--Sobic004G145550 Sobic008G014400--Sobic007G107800 Sobic007G113101 Sobic007G113101 Sobic008G014400--Sobic007G113101 Sobic006G244200 Sobic006G244200 Sobic008G014400--Sobic006G244200 Sobic008G014400--Sobic005G070901 Sobic008G014400--Sobic006G206600 Sobic008G014400--Sobic004G208800 Sobic008G014400--Sobic003G384750 Sobic004G312000--Sobic003G047400 Sobic004G312000--Sobic001G444200 Sobic004G312000--Sobic007G107800 Sobic004G312000--Sobic001G159500 Sobic004G312000--Sobic005G100500 Sobic004G312000--Sobic001G332933 Sobic002G257600 Sobic002G257600 Sobic004G312000--Sobic002G257600 Sobic004G312000--Sobic004G145550 Sobic010G148100 Sobic010G148100 Sobic004G312000--Sobic010G148100 Sobic004G053100--Sobic005G100500 Sobic003G107000 Sobic003G107000 Sobic004G053100--Sobic003G107000 Sobic002G403700 Sobic002G403700 Sobic004G053100--Sobic002G403700 Sobic001G365266 Sobic001G365266 Sobic004G053100--Sobic001G365266 Sobic002G306500 Sobic002G306500 Sobic004G053100--Sobic002G306500 Sobic001G221601 Sobic001G221601 Sobic004G053100--Sobic001G221601 Sobic004G053100--Sobic003G409500 Sobic009G166650 Sobic009G166650 Sobic004G053100--Sobic009G166650 Sobic004G053100--Sobic004G312000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.