Gene annotation
Transcriptome id Sobic.004G312000.1
Synonym PDE247, CLB19, Sb04g034420
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
tetratricopeptide-like helical, putative, expressed
UniProt C5XSX8
Pfam PF13812 PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF778
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05750 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g53050.1 : tetratricopeptide-like helical, putative, expressed
MaizeGDB (Corn) Zm00025a033076
Brachypodium -
Barley HORVU6Hr1G079830.1
Wheat TraesCS6D02G306500 , TraesCS6B02G358400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G047400 pentatricopeptide, putative, expressed -
2 Sobic.001G444200 pentatricopeptide, putative, expressed -
3 Sobic.007G107800 expressed protein -
4 Sobic.001G159500 tesmin/TSO1-like CXC domain containing protein, expressed -
5 Sobic.005G100500 RNA polymerase subunit, putative, expressed K03020: RPC19, DNA-directed RNA polymerases I and III subunit RPAC2
6 Sobic.001G332933 - -
7 Sobic.002G257600 PPR repeat containing protein, expressed -
8 Sobic.004G145550 - -
9 Sobic.010G148100 OsMADS75 - MADS-box family gene with M-alpha type-box, expressed -
10 Sobic.001G520600 DNA topoisomerase 2, putative, expressed -
11 Sobic.004G298250 - -
12 Sobic.003G409500 - -
13 Sobic.003G290200 expressed protein -
14 Sobic.003G398500 Uncharacterized ACR, COG1565 containing protein, putative, expressed -
15 Sobic.001G527600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@radical SAM enzyme, putative, expressed K02495: hemN, oxygen-independent coproporphyrinogen III oxidase
16 Sobic.004G053100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.004G120400 expressed protein -
18 Sobic.004G208800 expressed protein -
19 Sobic.002G057200 targeting protein for Xklp2, putative, expressed -
20 Sobic.005G005300 expressed protein -


Gene co-expression network
sample Sobic004G312000 Sobic004G312000 Sobic003G047400 Sobic003G047400 Sobic004G312000--Sobic003G047400 Sobic001G444200 Sobic001G444200 Sobic004G312000--Sobic001G444200 Sobic007G107800 Sobic007G107800 Sobic004G312000--Sobic007G107800 Sobic001G159500 Sobic001G159500 Sobic004G312000--Sobic001G159500 Sobic005G100500 Sobic005G100500 Sobic004G312000--Sobic005G100500 Sobic001G332933 Sobic001G332933 Sobic004G312000--Sobic001G332933 Sobic002G257600 Sobic002G257600 Sobic004G312000--Sobic002G257600 Sobic004G145550 Sobic004G145550 Sobic004G312000--Sobic004G145550 Sobic010G148100 Sobic010G148100 Sobic004G312000--Sobic010G148100 Sobic003G047400--Sobic001G332933 Sobic003G047400--Sobic001G159500 Sobic003G047400--Sobic004G312000 Sobic003G047400--Sobic001G444200 Sobic004G298250 Sobic004G298250 Sobic003G047400--Sobic004G298250 Sobic003G384750 Sobic003G384750 Sobic003G047400--Sobic003G384750 Sobic003G047400--Sobic004G145550 Sobic004G120400 Sobic004G120400 Sobic003G047400--Sobic004G120400 Sobic003G047400--Sobic007G107800 Sobic007G160050 Sobic007G160050 Sobic001G444200--Sobic007G160050 Sobic001G444200--Sobic003G384750 Sobic004G208800 Sobic004G208800 Sobic001G444200--Sobic004G208800 Sobic001G444200--Sobic001G159500 Sobic001G201933 Sobic001G201933 Sobic001G444200--Sobic001G201933 Sobic001G444200--Sobic003G047400 Sobic001G444200--Sobic004G145550 Sobic001G395600 Sobic001G395600 Sobic001G444200--Sobic001G395600 Sobic003G139600 Sobic003G139600 Sobic001G444200--Sobic003G139600 Sobic004G157050 Sobic004G157050 Sobic007G107800--Sobic004G157050 Sobic004G207800 Sobic004G207800 Sobic007G107800--Sobic004G207800 Sobic009G192200 Sobic009G192200 Sobic007G107800--Sobic009G192200 Sobic007G113566 Sobic007G113566 Sobic007G107800--Sobic007G113566 Sobic003G290200 Sobic003G290200 Sobic007G107800--Sobic003G290200 Sobic010G002301 Sobic010G002301 Sobic007G107800--Sobic010G002301 Sobic007G107800--Sobic001G332933 Sobic008G171200 Sobic008G171200 Sobic007G107800--Sobic008G171200 Sobic007G085900 Sobic007G085900 Sobic007G107800--Sobic007G085900 Sobic001G159500--Sobic003G384750 Sobic001G159500--Sobic007G160050 Sobic001G159500--Sobic003G047400 Sobic001G159500--Sobic001G444200 Sobic003G413550 Sobic003G413550 Sobic001G159500--Sobic003G413550 Sobic001G159500--Sobic004G145550 Sobic003G232500 Sobic003G232500 Sobic001G159500--Sobic003G232500 Sobic008G057200 Sobic008G057200 Sobic001G159500--Sobic008G057200 Sobic009G174800 Sobic009G174800 Sobic001G159500--Sobic009G174800 Sobic006G108500 Sobic006G108500 Sobic005G100500--Sobic006G108500 Sobic003G409500 Sobic003G409500 Sobic005G100500--Sobic003G409500 Sobic005G100500--Sobic007G107800 Sobic010G267300 Sobic010G267300 Sobic005G100500--Sobic010G267300 Sobic005G100500--Sobic001G395600 Sobic009G218700 Sobic009G218700 Sobic005G100500--Sobic009G218700 Sobic004G015600 Sobic004G015600 Sobic005G100500--Sobic004G015600 Sobic005G100500--Sobic007G113566 Sobic005G100500--Sobic004G157050 Sobic005G156450 Sobic005G156450 Sobic001G332933--Sobic005G156450 Sobic001G332933--Sobic007G107800 Sobic001G332933--Sobic003G047400 Sobic002G276500 Sobic002G276500 Sobic001G332933--Sobic002G276500 Sobic003G204750 Sobic003G204750 Sobic001G332933--Sobic003G204750 Sobic009G087480 Sobic009G087480 Sobic001G332933--Sobic009G087480 Sobic001G332933--Sobic003G290200 Sobic007G070100 Sobic007G070100 Sobic001G332933--Sobic007G070100 Sobic006G183500 Sobic006G183500 Sobic001G332933--Sobic006G183500 Sobic002G257600--Sobic003G232500 Sobic002G257600--Sobic001G159500 Sobic002G257600--Sobic004G312000 Sobic002G257600--Sobic003G384750 Sobic002G257600--Sobic001G444200 Sobic004G200100 Sobic004G200100 Sobic002G257600--Sobic004G200100 Sobic003G394000 Sobic003G394000 Sobic002G257600--Sobic003G394000 Sobic001G179500 Sobic001G179500 Sobic002G257600--Sobic001G179500 Sobic001G069300 Sobic001G069300 Sobic002G257600--Sobic001G069300 Sobic006G244200 Sobic006G244200 Sobic004G145550--Sobic006G244200 Sobic001G520600 Sobic001G520600 Sobic004G145550--Sobic001G520600 Sobic010G093200 Sobic010G093200 Sobic004G145550--Sobic010G093200 Sobic004G145550--Sobic003G384750 Sobic002G375200 Sobic002G375200 Sobic004G145550--Sobic002G375200 Sobic008G014400 Sobic008G014400 Sobic004G145550--Sobic008G014400 Sobic001G123400 Sobic001G123400 Sobic004G145550--Sobic001G123400 Sobic009G143600 Sobic009G143600 Sobic004G145550--Sobic009G143600 Sobic004G334601 Sobic004G334601 Sobic004G145550--Sobic004G334601 Sobic010G148100--Sobic004G145550 Sobic006G206600 Sobic006G206600 Sobic010G148100--Sobic006G206600 Sobic010G148100--Sobic001G444200 Sobic010G148100--Sobic001G201933 Sobic010G148100--Sobic007G107800 Sobic006G263250 Sobic006G263250 Sobic010G148100--Sobic006G263250 Sobic010G148100--Sobic001G520600 Sobic010G148100--Sobic007G113566 Sobic006G135701 Sobic006G135701 Sobic010G148100--Sobic006G135701
Octagon: transcription factors


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