Gene annotation
Transcriptome id Sobic.001G527600.1
Synonym Sb01g049090
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
radical SAM enzyme, putative, expressed
UniProt A0A1Z5SBY4
Pfam PF06969 PF04055
Panther DB PTHR13932 PTHR13932:SF3
NCBI CDD -
KEGG Orthology K02495; hemN, oxygen-independent coproporphyrinogen III oxidase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT5G63290 : Radical SAM superfamily protein
RAP-DB (Rice) LOC_Os12g17070.1 : radical SAM enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a000298
Brachypodium KQJ91699 , KQJ91698 , KQJ91697 , PNT65241 , PNT65240
Barley HORVU1Hr1G083800.6 , HORVU1Hr1G083800.5 , HORVU1Hr1G083800.3
Wheat TraesCS1A02G378600 , TraesCS1D02G385500 , TraesCS1B02G399600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1,4-alpha-glucan-branching enzyme, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
2 Sobic.004G250100 pentatricopeptide, putative, expressed -
3 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.004G255300 pentatricopeptide, putative, expressed -
5 Sobic.004G312000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
6 Sobic.003G433600 pentatricopeptide, putative, expressed -
7 Sobic.009G136200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.002G407800 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
9 Sobic.004G046001 - -
10 Sobic.007G042200 Leucine Rich Repeat family protein, expressed -
11 Sobic.001G200600 PPR repeat domain containing protein, putative, expressed -
12 Sobic.005G142900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G490700 pentatricopeptide, putative, expressed -
14 Sobic.001G284200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CS domain containing protein, putative, expressed -
15 Sobic.002G167400 pentatricopeptide, putative, expressed -
16 Sobic.001G228300 SAP domain containing protein, expressed -
17 Sobic.002G088800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.001G412200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.008G110900 E2F-related protein, putative, expressed -
20 Sobic.009G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic001G527600 Sobic001G527600 Sobic003G213800 Sobic003G213800 Sobic001G527600--Sobic003G213800 Sobic004G250100 Sobic004G250100 Sobic001G527600--Sobic004G250100 Sobic003G203100 Sobic003G203100 Sobic001G527600--Sobic003G203100 Sobic004G255300 Sobic004G255300 Sobic001G527600--Sobic004G255300 Sobic004G312000 Sobic004G312000 Sobic001G527600--Sobic004G312000 Sobic003G433600 Sobic003G433600 Sobic001G527600--Sobic003G433600 Sobic009G136200 Sobic009G136200 Sobic001G527600--Sobic009G136200 Sobic002G407800 Sobic002G407800 Sobic001G527600--Sobic002G407800 Sobic004G046001 Sobic004G046001 Sobic001G527600--Sobic004G046001 Sobic003G345300 Sobic003G345300 Sobic003G213800--Sobic003G345300 Sobic003G213800--Sobic004G250100 Sobic003G213800--Sobic001G527600 Sobic001G284200 Sobic001G284200 Sobic003G213800--Sobic001G284200 Sobic001G437801 Sobic001G437801 Sobic003G213800--Sobic001G437801 Sobic001G228300 Sobic001G228300 Sobic003G213800--Sobic001G228300 Sobic008G153200 Sobic008G153200 Sobic003G213800--Sobic008G153200 Sobic003G214800 Sobic003G214800 Sobic003G213800--Sobic003G214800 Sobic005G142900 Sobic005G142900 Sobic003G213800--Sobic005G142900 Sobic007G179500 Sobic007G179500 Sobic004G250100--Sobic007G179500 Sobic004G250100--Sobic003G433600 Sobic001G200600 Sobic001G200600 Sobic004G250100--Sobic001G200600 Sobic004G250100--Sobic003G213800 Sobic010G143400 Sobic010G143400 Sobic004G250100--Sobic010G143400 Sobic001G490700 Sobic001G490700 Sobic004G250100--Sobic001G490700 Sobic008G178300 Sobic008G178300 Sobic004G250100--Sobic008G178300 Sobic002G385200 Sobic002G385200 Sobic004G250100--Sobic002G385200 Sobic004G250100--Sobic001G527600 Sobic010G232700 Sobic010G232700 Sobic003G203100--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic003G203100--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic003G203100--Sobic006G085900 Sobic002G084400 Sobic002G084400 Sobic003G203100--Sobic002G084400 Sobic008G009300 Sobic008G009300 Sobic003G203100--Sobic008G009300 Sobic002G389200 Sobic002G389200 Sobic003G203100--Sobic002G389200 Sobic003G203100--Sobic001G490700 Sobic002G167400 Sobic002G167400 Sobic003G203100--Sobic002G167400 Sobic005G210700 Sobic005G210700 Sobic003G203100--Sobic005G210700 Sobic002G111700 Sobic002G111700 Sobic004G255300--Sobic002G111700 Sobic004G255300--Sobic003G203100 Sobic001G412200 Sobic001G412200 Sobic004G255300--Sobic001G412200 Sobic004G255300--Sobic001G527600 Sobic004G255300--Sobic002G407800 Sobic001G212200 Sobic001G212200 Sobic004G255300--Sobic001G212200 Sobic004G255300--Sobic010G232700 Sobic004G255300--Sobic003G213800 Sobic004G255300--Sobic004G250100 Sobic003G047400 Sobic003G047400 Sobic004G312000--Sobic003G047400 Sobic001G444200 Sobic001G444200 Sobic004G312000--Sobic001G444200 Sobic007G107800 Sobic007G107800 Sobic004G312000--Sobic007G107800 Sobic001G159500 Sobic001G159500 Sobic004G312000--Sobic001G159500 Sobic005G100500 Sobic005G100500 Sobic004G312000--Sobic005G100500 Sobic001G332933 Sobic001G332933 Sobic004G312000--Sobic001G332933 Sobic002G257600 Sobic002G257600 Sobic004G312000--Sobic002G257600 Sobic004G145550 Sobic004G145550 Sobic004G312000--Sobic004G145550 Sobic010G148100 Sobic010G148100 Sobic004G312000--Sobic010G148100 Sobic003G433600--Sobic004G250100 Sobic003G202700 Sobic003G202700 Sobic003G433600--Sobic003G202700 Sobic003G433600--Sobic001G200600 Sobic007G013200 Sobic007G013200 Sobic003G433600--Sobic007G013200 Sobic003G433600--Sobic001G490700 Sobic003G032301 Sobic003G032301 Sobic003G433600--Sobic003G032301 Sobic001G491500 Sobic001G491500 Sobic003G433600--Sobic001G491500 Sobic003G433600--Sobic008G178300 Sobic006G222901 Sobic006G222901 Sobic003G433600--Sobic006G222901 Sobic007G179600 Sobic007G179600 Sobic009G136200--Sobic007G179600 Sobic009G136200--Sobic001G412200 Sobic002G042900 Sobic002G042900 Sobic009G136200--Sobic002G042900 Sobic001G001200 Sobic001G001200 Sobic009G136200--Sobic001G001200 Sobic009G136200--Sobic002G385200 Sobic003G051500 Sobic003G051500 Sobic009G136200--Sobic003G051500 Sobic009G136200--Sobic004G250100 Sobic009G136200--Sobic002G167400 Sobic009G136200--Sobic003G203100 Sobic010G099300 Sobic010G099300 Sobic002G407800--Sobic010G099300 Sobic001G040600 Sobic001G040600 Sobic002G407800--Sobic001G040600 Sobic001G254400 Sobic001G254400 Sobic002G407800--Sobic001G254400 Sobic002G407800--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic002G407800--Sobic001G395300 Sobic001G081300 Sobic001G081300 Sobic002G407800--Sobic001G081300 Sobic002G407800--Sobic002G389200 Sobic007G182600 Sobic007G182600 Sobic002G407800--Sobic007G182600 Sobic008G056900 Sobic008G056900 Sobic002G407800--Sobic008G056900 Sobic008G140000 Sobic008G140000 Sobic004G046001--Sobic008G140000 Sobic004G046001--Sobic004G250100 Sobic008G142766 Sobic008G142766 Sobic004G046001--Sobic008G142766 Sobic004G046001--Sobic001G527600 Sobic006G055100 Sobic006G055100 Sobic004G046001--Sobic006G055100 Sobic003G091850 Sobic003G091850 Sobic004G046001--Sobic003G091850 Sobic008G110900 Sobic008G110900 Sobic004G046001--Sobic008G110900 Sobic004G046001--Sobic008G178300 Sobic002G074300 Sobic002G074300 Sobic004G046001--Sobic002G074300
Octagon: transcription factors


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