Gene annotation
Transcriptome id Sobic.002G088800.1
Synonym Sb02g007340
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5X201
Pfam PF13812 PF01535
Panther DB PTHR24015 PTHR24015:SF281
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18520 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os07g14100.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a045486
Brachypodium -
Barley -
Wheat TraesCS5D02G512700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G385200 pentatricopeptide, putative, expressed -
2 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
3 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
5 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
6 Sobic.003G128000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.006G099600 - -
8 Sobic.001G240850 - -
9 Sobic.010G085000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.006G099501 - -
11 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
12 Sobic.008G009000 pentatricopeptide, putative, expressed -
13 Sobic.003G277100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.008G110900 E2F-related protein, putative, expressed -
15 Sobic.010G143400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.001G212200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LOI1, putative, expressed -
17 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.009G253200 RNA polymerase sigma factor, putative, expressed -
19 Sobic.004G250100 pentatricopeptide, putative, expressed -
20 Sobic.001G149100 vegetative storage protein, putative, expressed -


Gene co-expression network
sample Sobic002G088800 Sobic002G088800 Sobic002G385200 Sobic002G385200 Sobic002G088800--Sobic002G385200 Sobic005G210700 Sobic005G210700 Sobic002G088800--Sobic005G210700 Sobic001G001200 Sobic001G001200 Sobic002G088800--Sobic001G001200 Sobic003G051500 Sobic003G051500 Sobic002G088800--Sobic003G051500 Sobic005G011000 Sobic005G011000 Sobic002G088800--Sobic005G011000 Sobic003G128000 Sobic003G128000 Sobic002G088800--Sobic003G128000 Sobic006G099600 Sobic006G099600 Sobic002G088800--Sobic006G099600 Sobic001G240850 Sobic001G240850 Sobic002G088800--Sobic001G240850 Sobic010G085000 Sobic010G085000 Sobic002G088800--Sobic010G085000 Sobic002G385200--Sobic005G210700 Sobic005G148500 Sobic005G148500 Sobic002G385200--Sobic005G148500 Sobic001G182300 Sobic001G182300 Sobic002G385200--Sobic001G182300 Sobic005G148400 Sobic005G148400 Sobic002G385200--Sobic005G148400 Sobic006G099501 Sobic006G099501 Sobic002G385200--Sobic006G099501 Sobic002G385200--Sobic001G001200 Sobic008G066900 Sobic008G066900 Sobic002G385200--Sobic008G066900 Sobic007G179600 Sobic007G179600 Sobic002G385200--Sobic007G179600 Sobic010G143400 Sobic010G143400 Sobic002G385200--Sobic010G143400 Sobic008G099900 Sobic008G099900 Sobic005G210700--Sobic008G099900 Sobic009G155400 Sobic009G155400 Sobic005G210700--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic005G210700--Sobic009G116400 Sobic006G085900 Sobic006G085900 Sobic005G210700--Sobic006G085900 Sobic005G210700--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic005G210700--Sobic001G347100 Sobic005G210700--Sobic008G066900 Sobic006G069100 Sobic006G069100 Sobic005G210700--Sobic006G069100 Sobic005G210700--Sobic005G011000 Sobic001G001200--Sobic003G051500 Sobic005G028300 Sobic005G028300 Sobic001G001200--Sobic005G028300 Sobic003G419800 Sobic003G419800 Sobic001G001200--Sobic003G419800 Sobic001G391101 Sobic001G391101 Sobic001G001200--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G081300 Sobic001G081300 Sobic001G001200--Sobic001G081300 Sobic001G001200--Sobic007G179600 Sobic010G083900 Sobic010G083900 Sobic001G001200--Sobic010G083900 Sobic003G051500--Sobic001G391101 Sobic003G051500--Sobic001G001200 Sobic003G051500--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G051500--Sobic003G419800 Sobic007G182600 Sobic007G182600 Sobic003G051500--Sobic007G182600 Sobic010G099300 Sobic010G099300 Sobic003G051500--Sobic010G099300 Sobic004G217900 Sobic004G217900 Sobic003G051500--Sobic004G217900 Sobic006G271900 Sobic006G271900 Sobic005G011000--Sobic006G271900 Sobic005G011000--Sobic009G116400 Sobic004G036700 Sobic004G036700 Sobic005G011000--Sobic004G036700 Sobic005G011000--Sobic001G347100 Sobic005G011000--Sobic005G210700 Sobic001G187800 Sobic001G187800 Sobic005G011000--Sobic001G187800 Sobic005G011000--Sobic003G419800 Sobic002G389200 Sobic002G389200 Sobic005G011000--Sobic002G389200 Sobic005G011000--Sobic005G028300 Sobic001G392100 Sobic001G392100 Sobic003G128000--Sobic001G392100 Sobic003G128000--Sobic009G155400 Sobic001G009400 Sobic001G009400 Sobic003G128000--Sobic001G009400 Sobic008G163400 Sobic008G163400 Sobic003G128000--Sobic008G163400 Sobic003G128000--Sobic004G217900 Sobic001G149100 Sobic001G149100 Sobic003G128000--Sobic001G149100 Sobic003G239000 Sobic003G239000 Sobic003G128000--Sobic003G239000 Sobic003G128000--Sobic001G347100 Sobic001G254400 Sobic001G254400 Sobic003G128000--Sobic001G254400 Sobic002G128400 Sobic002G128400 Sobic006G099600--Sobic002G128400 Sobic009G162401 Sobic009G162401 Sobic006G099600--Sobic009G162401 Sobic001G271000 Sobic001G271000 Sobic006G099600--Sobic001G271000 Sobic005G085100 Sobic005G085100 Sobic006G099600--Sobic005G085100 Sobic006G099600--Sobic005G148400 Sobic005G043400 Sobic005G043400 Sobic006G099600--Sobic005G043400 Sobic006G099600--Sobic006G099501 Sobic006G099600--Sobic010G143400 Sobic005G221550 Sobic005G221550 Sobic006G099600--Sobic005G221550 Sobic001G240850--Sobic005G210700 Sobic001G240850--Sobic002G088800 Sobic001G182000 Sobic001G182000 Sobic001G240850--Sobic001G182000 Sobic010G066900 Sobic010G066900 Sobic001G240850--Sobic010G066900 Sobic001G212200 Sobic001G212200 Sobic001G240850--Sobic001G212200 Sobic009G253200 Sobic009G253200 Sobic001G240850--Sobic009G253200 Sobic001G240850--Sobic005G011000 Sobic006G075450 Sobic006G075450 Sobic001G240850--Sobic006G075450 Sobic008G075100 Sobic008G075100 Sobic001G240850--Sobic008G075100 Sobic009G042500 Sobic009G042500 Sobic010G085000--Sobic009G042500 Sobic010G085000--Sobic002G088800 Sobic003G375100 Sobic003G375100 Sobic010G085000--Sobic003G375100 Sobic003G276500 Sobic003G276500 Sobic010G085000--Sobic003G276500 Sobic004G028400 Sobic004G028400 Sobic010G085000--Sobic004G028400 Sobic001G200600 Sobic001G200600 Sobic010G085000--Sobic001G200600 Sobic002G136600 Sobic002G136600 Sobic010G085000--Sobic002G136600 Sobic008G149200 Sobic008G149200 Sobic010G085000--Sobic008G149200 Sobic004G250100 Sobic004G250100 Sobic010G085000--Sobic004G250100
Octagon: transcription factors


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