Gene annotation
Transcriptome id Sobic.003G277100.1
Synonym OTP82, Sb03g032890
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5XIA9
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF148
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08070 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g51810.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a025956 , Zm00025a032215
Brachypodium KQK09420
Barley HORVU3Hr1G067720.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G450300 PPR repeat containing protein, putative, expressed -
2 Sobic.001G105600 OsFBDUF60 - F-box and DUF domain containing protein, expressed -
3 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
4 Sobic.002G267600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
6 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.002G088800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
9 Sobic.009G116400 pentatricopeptide, putative, expressed -
10 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
11 Sobic.004G174800 expressed protein -
12 Sobic.008G009000 pentatricopeptide, putative, expressed -
13 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
14 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.002G183300 GTP binding protein, putative, expressed -
16 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
17 Sobic.006G085900 pentatricopeptide, putative, expressed -
18 Sobic.003G183900 pentatricopeptide, putative, expressed -
19 Sobic.010G256000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.009G253200 RNA polymerase sigma factor, putative, expressed -


Gene co-expression network
sample Sobic003G277100 Sobic003G277100 Sobic001G450300 Sobic001G450300 Sobic003G277100--Sobic001G450300 Sobic001G105600 Sobic001G105600 Sobic003G277100--Sobic001G105600 Sobic008G099900 Sobic008G099900 Sobic003G277100--Sobic008G099900 Sobic002G267600 Sobic002G267600 Sobic003G277100--Sobic002G267600 Sobic005G210700 Sobic005G210700 Sobic003G277100--Sobic005G210700 Sobic001G001200 Sobic001G001200 Sobic003G277100--Sobic001G001200 Sobic002G088800 Sobic002G088800 Sobic003G277100--Sobic002G088800 Sobic004G025100 Sobic004G025100 Sobic003G277100--Sobic004G025100 Sobic009G116400 Sobic009G116400 Sobic003G277100--Sobic009G116400 Sobic004G174800 Sobic004G174800 Sobic001G450300--Sobic004G174800 Sobic001G450300--Sobic003G277100 Sobic008G012700 Sobic008G012700 Sobic001G450300--Sobic008G012700 Sobic008G007300 Sobic008G007300 Sobic001G450300--Sobic008G007300 Sobic004G159600 Sobic004G159600 Sobic001G450300--Sobic004G159600 Sobic002G244700 Sobic002G244700 Sobic001G450300--Sobic002G244700 Sobic006G212500 Sobic006G212500 Sobic001G450300--Sobic006G212500 Sobic003G009400 Sobic003G009400 Sobic001G450300--Sobic003G009400 Sobic007G199300 Sobic007G199300 Sobic001G450300--Sobic007G199300 Sobic001G105600--Sobic008G099900 Sobic002G183300 Sobic002G183300 Sobic001G105600--Sobic002G183300 Sobic006G271900 Sobic006G271900 Sobic001G105600--Sobic006G271900 Sobic010G092801 Sobic010G092801 Sobic001G105600--Sobic010G092801 Sobic004G227100 Sobic004G227100 Sobic001G105600--Sobic004G227100 Sobic006G109400 Sobic006G109400 Sobic001G105600--Sobic006G109400 Sobic001G105600--Sobic004G025100 Sobic001G105600--Sobic005G210700 Sobic006G193500 Sobic006G193500 Sobic001G105600--Sobic006G193500 Sobic008G099900--Sobic005G210700 Sobic006G085900 Sobic006G085900 Sobic008G099900--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic008G099900--Sobic009G155400 Sobic002G251800 Sobic002G251800 Sobic008G099900--Sobic002G251800 Sobic004G217900 Sobic004G217900 Sobic008G099900--Sobic004G217900 Sobic008G099900--Sobic006G109400 Sobic008G099900--Sobic009G116400 Sobic007G179600 Sobic007G179600 Sobic008G099900--Sobic007G179600 Sobic008G099900--Sobic006G271900 Sobic008G163400 Sobic008G163400 Sobic002G267600--Sobic008G163400 Sobic003G239000 Sobic003G239000 Sobic002G267600--Sobic003G239000 Sobic001G149100 Sobic001G149100 Sobic002G267600--Sobic001G149100 Sobic007G031300 Sobic007G031300 Sobic002G267600--Sobic007G031300 Sobic003G299200 Sobic003G299200 Sobic002G267600--Sobic003G299200 Sobic008G179000 Sobic008G179000 Sobic002G267600--Sobic008G179000 Sobic004G208100 Sobic004G208100 Sobic002G267600--Sobic004G208100 Sobic001G408300 Sobic001G408300 Sobic002G267600--Sobic001G408300 Sobic004G047500 Sobic004G047500 Sobic002G267600--Sobic004G047500 Sobic005G210700--Sobic008G099900 Sobic005G210700--Sobic009G155400 Sobic005G210700--Sobic009G116400 Sobic005G210700--Sobic006G085900 Sobic005G210700--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic005G210700--Sobic001G347100 Sobic008G066900 Sobic008G066900 Sobic005G210700--Sobic008G066900 Sobic006G069100 Sobic006G069100 Sobic005G210700--Sobic006G069100 Sobic005G011000 Sobic005G011000 Sobic005G210700--Sobic005G011000 Sobic003G051500 Sobic003G051500 Sobic001G001200--Sobic003G051500 Sobic005G028300 Sobic005G028300 Sobic001G001200--Sobic005G028300 Sobic003G419800 Sobic003G419800 Sobic001G001200--Sobic003G419800 Sobic001G391101 Sobic001G391101 Sobic001G001200--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G081300 Sobic001G081300 Sobic001G001200--Sobic001G081300 Sobic001G001200--Sobic007G179600 Sobic010G083900 Sobic010G083900 Sobic001G001200--Sobic010G083900 Sobic002G385200 Sobic002G385200 Sobic002G088800--Sobic002G385200 Sobic002G088800--Sobic005G210700 Sobic002G088800--Sobic001G001200 Sobic002G088800--Sobic003G051500 Sobic002G088800--Sobic005G011000 Sobic003G128000 Sobic003G128000 Sobic002G088800--Sobic003G128000 Sobic006G099600 Sobic006G099600 Sobic002G088800--Sobic006G099600 Sobic001G240850 Sobic001G240850 Sobic002G088800--Sobic001G240850 Sobic010G085000 Sobic010G085000 Sobic002G088800--Sobic010G085000 Sobic004G025100--Sobic006G069100 Sobic010G256000 Sobic010G256000 Sobic004G025100--Sobic010G256000 Sobic004G025100--Sobic009G155400 Sobic004G025100--Sobic002G183300 Sobic002G084400 Sobic002G084400 Sobic004G025100--Sobic002G084400 Sobic004G025100--Sobic005G028300 Sobic004G025100--Sobic005G210700 Sobic004G025100--Sobic009G116400 Sobic004G025100--Sobic006G085900 Sobic009G116400--Sobic009G155400 Sobic006G262700 Sobic006G262700 Sobic009G116400--Sobic006G262700 Sobic009G116400--Sobic008G163400 Sobic010G190900 Sobic010G190900 Sobic009G116400--Sobic010G190900 Sobic007G087900 Sobic007G087900 Sobic009G116400--Sobic007G087900 Sobic009G116400--Sobic006G069100 Sobic009G116400--Sobic005G210700 Sobic004G346200 Sobic004G346200 Sobic009G116400--Sobic004G346200 Sobic004G241000 Sobic004G241000 Sobic009G116400--Sobic004G241000
Octagon: transcription factors


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