Gene annotation
Transcriptome id Sobic.008G009000.1
Synonym
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6PB50
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015:SF891 PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G08820 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os11g01836.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a042168
Brachypodium -
Barley HORVU5Hr1G047250.3 , HORVU5Hr1G047250.2 , HORVU5Hr1G047250.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
3 Sobic.001G149100 vegetative storage protein, putative, expressed -
4 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
5 Sobic.002G267600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
8 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
9 Sobic.003G142400 pentatricopeptide, putative, expressed -
10 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
11 Sobic.008G031200 pentatricopeptide, putative, expressed -
12 Sobic.007G123100 PPR repeat domain containing protein, putative, expressed -
13 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
14 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
18 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
19 Sobic.006G069100 pentatricopeptide, putative, expressed -
20 Sobic.001G122200 zinc finger protein, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD


Gene co-expression network
sample Sobic008G009000 Sobic008G009000 Sobic008G179000 Sobic008G179000 Sobic008G009000--Sobic008G179000 Sobic003G239000 Sobic003G239000 Sobic008G009000--Sobic003G239000 Sobic001G149100 Sobic001G149100 Sobic008G009000--Sobic001G149100 Sobic008G163400 Sobic008G163400 Sobic008G009000--Sobic008G163400 Sobic002G267600 Sobic002G267600 Sobic008G009000--Sobic002G267600 Sobic004G241000 Sobic004G241000 Sobic008G009000--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic008G009000--Sobic004G256900 Sobic010G252700 Sobic010G252700 Sobic008G009000--Sobic010G252700 Sobic003G142400 Sobic003G142400 Sobic008G009000--Sobic003G142400 Sobic008G179000--Sobic010G252700 Sobic008G031200 Sobic008G031200 Sobic008G179000--Sobic008G031200 Sobic001G268300 Sobic001G268300 Sobic008G179000--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic008G179000--Sobic002G362200 Sobic007G123100 Sobic007G123100 Sobic008G179000--Sobic007G123100 Sobic008G179000--Sobic001G149100 Sobic008G179000--Sobic004G241000 Sobic008G179000--Sobic004G256900 Sobic008G179000--Sobic008G009000 Sobic003G239000--Sobic008G163400 Sobic003G239000--Sobic004G241000 Sobic003G239000--Sobic002G267600 Sobic003G239000--Sobic001G149100 Sobic009G155400 Sobic009G155400 Sobic003G239000--Sobic009G155400 Sobic003G239000--Sobic008G179000 Sobic006G069100 Sobic006G069100 Sobic003G239000--Sobic006G069100 Sobic003G239000--Sobic004G256900 Sobic008G066900 Sobic008G066900 Sobic003G239000--Sobic008G066900 Sobic001G347100 Sobic001G347100 Sobic001G149100--Sobic001G347100 Sobic003G299200 Sobic003G299200 Sobic001G149100--Sobic003G299200 Sobic001G149100--Sobic010G252700 Sobic001G149100--Sobic008G179000 Sobic001G149100--Sobic004G241000 Sobic001G149100--Sobic008G163400 Sobic001G149100--Sobic003G239000 Sobic001G149100--Sobic006G069100 Sobic001G149100--Sobic002G267600 Sobic008G163400--Sobic003G239000 Sobic008G163400--Sobic004G241000 Sobic008G163400--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic008G163400--Sobic009G116400 Sobic008G163400--Sobic004G256900 Sobic006G262800 Sobic006G262800 Sobic008G163400--Sobic006G262800 Sobic001G122200 Sobic001G122200 Sobic008G163400--Sobic001G122200 Sobic008G163400--Sobic002G267600 Sobic008G163400--Sobic001G149100 Sobic002G267600--Sobic008G163400 Sobic002G267600--Sobic003G239000 Sobic002G267600--Sobic001G149100 Sobic007G031300 Sobic007G031300 Sobic002G267600--Sobic007G031300 Sobic002G267600--Sobic003G299200 Sobic002G267600--Sobic008G179000 Sobic004G208100 Sobic004G208100 Sobic002G267600--Sobic004G208100 Sobic001G408300 Sobic001G408300 Sobic002G267600--Sobic001G408300 Sobic004G047500 Sobic004G047500 Sobic002G267600--Sobic004G047500 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic010G190900 Sobic010G190900 Sobic004G241000--Sobic010G190900 Sobic010G068900 Sobic010G068900 Sobic004G241000--Sobic010G068900 Sobic004G241000--Sobic003G239000 Sobic006G085900 Sobic006G085900 Sobic004G241000--Sobic006G085900 Sobic002G172500 Sobic002G172500 Sobic004G241000--Sobic002G172500 Sobic004G241000--Sobic009G155400 Sobic003G184300 Sobic003G184300 Sobic004G256900--Sobic003G184300 Sobic004G256900--Sobic004G241000 Sobic004G256900--Sobic010G068900 Sobic004G256900--Sobic002G172500 Sobic004G256900--Sobic006G069100 Sobic004G256900--Sobic006G262800 Sobic004G256900--Sobic010G190900 Sobic001G478900 Sobic001G478900 Sobic004G256900--Sobic001G478900 Sobic004G256900--Sobic008G163400 Sobic010G252700--Sobic008G179000 Sobic010G252700--Sobic007G123100 Sobic009G052100 Sobic009G052100 Sobic010G252700--Sobic009G052100 Sobic010G252700--Sobic002G362200 Sobic010G252700--Sobic001G149100 Sobic010G252700--Sobic008G031200 Sobic008G090000 Sobic008G090000 Sobic010G252700--Sobic008G090000 Sobic006G071628 Sobic006G071628 Sobic010G252700--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic010G252700--Sobic010G250800 Sobic003G142400--Sobic001G268300 Sobic003G142400--Sobic006G262800 Sobic003G142400--Sobic010G068900 Sobic003G142400--Sobic001G478900 Sobic003G142400--Sobic003G184300 Sobic003G142400--Sobic008G163400 Sobic003G142400--Sobic004G241000 Sobic003G142400--Sobic008G179000 Sobic009G041800 Sobic009G041800 Sobic003G142400--Sobic009G041800
Octagon: transcription factors


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