Gene annotation
Transcriptome id Sobic.001G490700.1
Synonym Sb01g045890
Functional annotation pentatricopeptide, putative, expressed
UniProt C5WWS7
Pfam PF13812 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF452
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G15300 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g07330.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a000843
Brachypodium KQK23433
Barley HORVU4Hr1G075000.6 , HORVU4Hr1G075000.7 , HORVU4Hr1G075000.4 , HORVU4Hr1G075000.5 , HORVU4Hr1G075000.2 , HORVU4Hr1G075000.3 , HORVU4Hr1G075000.1 , HORVU4Hr1G075000.8 , HORVU4Hr1G075000.9 , HORVU4Hr1G075000.10 , HORVU4Hr1G075000.11 , HORVU4Hr1G075000.12 , HORVU4Hr1G075000.13
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G178200 NBS-LRR disease resistance protein, putative, expressed -
2 Sobic.008G178300 NBS-LRR disease resistance protein, putative, expressed -
3 Sobic.004G250100 pentatricopeptide, putative, expressed -
4 Sobic.007G179500 - -
5 Sobic.003G433600 pentatricopeptide, putative, expressed -
6 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.006G197500 helix-loop-helix DNA-binding protein, putative, expressed -
8 Sobic.005G108300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed K14506: jasmonic acid-amino synthetase
9 Sobic.004G033300 DNA polymerase V, putative, expressed K02331: POL5, DNA polymerase phi
10 Sobic.001G200600 PPR repeat domain containing protein, putative, expressed -
11 Sobic.009G237350 - -
12 Sobic.003G399900 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
13 Sobic.008G182500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thaumatin, putative, expressed -
14 Sobic.003G156766 - -
15 Sobic.002G331000 OsFBX462 - F-box domain containing protein, expressed -
16 Sobic.007G129401 - -
17 Sobic.008G013900 O-methyltransferase, putative, expressed -
18 Sobic.007G013200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.008G041000 expressed protein -
20 Sobic.009G101600 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -


Gene co-expression network
sample Sobic001G490700 Sobic001G490700 Sobic008G178200 Sobic008G178200 Sobic001G490700--Sobic008G178200 Sobic008G178300 Sobic008G178300 Sobic001G490700--Sobic008G178300 Sobic004G250100 Sobic004G250100 Sobic001G490700--Sobic004G250100 Sobic007G179500 Sobic007G179500 Sobic001G490700--Sobic007G179500 Sobic003G433600 Sobic003G433600 Sobic001G490700--Sobic003G433600 Sobic003G203100 Sobic003G203100 Sobic001G490700--Sobic003G203100 Sobic006G197500 Sobic006G197500 Sobic001G490700--Sobic006G197500 Sobic005G108300 Sobic005G108300 Sobic001G490700--Sobic005G108300 Sobic004G033300 Sobic004G033300 Sobic001G490700--Sobic004G033300 Sobic008G178200--Sobic008G178300 Sobic009G237350 Sobic009G237350 Sobic008G178200--Sobic009G237350 Sobic002G284600 Sobic002G284600 Sobic008G178200--Sobic002G284600 Sobic008G178200--Sobic001G490700 Sobic010G091366 Sobic010G091366 Sobic008G178200--Sobic010G091366 Sobic003G202700 Sobic003G202700 Sobic008G178200--Sobic003G202700 Sobic008G178200--Sobic003G433600 Sobic008G153900 Sobic008G153900 Sobic008G178200--Sobic008G153900 Sobic008G178200--Sobic004G250100 Sobic008G178300--Sobic008G178200 Sobic008G178300--Sobic009G237350 Sobic008G178300--Sobic002G284600 Sobic008G178300--Sobic001G490700 Sobic008G178300--Sobic004G250100 Sobic005G094001 Sobic005G094001 Sobic008G178300--Sobic005G094001 Sobic008G178300--Sobic003G433600 Sobic008G178300--Sobic003G202700 Sobic008G178300--Sobic007G179500 Sobic004G250100--Sobic007G179500 Sobic004G250100--Sobic003G433600 Sobic001G200600 Sobic001G200600 Sobic004G250100--Sobic001G200600 Sobic003G213800 Sobic003G213800 Sobic004G250100--Sobic003G213800 Sobic010G143400 Sobic010G143400 Sobic004G250100--Sobic010G143400 Sobic004G250100--Sobic001G490700 Sobic004G250100--Sobic008G178300 Sobic002G385200 Sobic002G385200 Sobic004G250100--Sobic002G385200 Sobic001G527600 Sobic001G527600 Sobic004G250100--Sobic001G527600 Sobic007G179500--Sobic004G250100 Sobic007G179500--Sobic001G200600 Sobic007G179500--Sobic001G490700 Sobic007G179500--Sobic002G385200 Sobic007G179500--Sobic008G178300 Sobic008G013900 Sobic008G013900 Sobic007G179500--Sobic008G013900 Sobic006G271900 Sobic006G271900 Sobic007G179500--Sobic006G271900 Sobic003G219000 Sobic003G219000 Sobic007G179500--Sobic003G219000 Sobic001G182300 Sobic001G182300 Sobic007G179500--Sobic001G182300 Sobic003G433600--Sobic004G250100 Sobic003G433600--Sobic003G202700 Sobic003G433600--Sobic001G200600 Sobic007G013200 Sobic007G013200 Sobic003G433600--Sobic007G013200 Sobic003G433600--Sobic001G490700 Sobic003G032301 Sobic003G032301 Sobic003G433600--Sobic003G032301 Sobic001G491500 Sobic001G491500 Sobic003G433600--Sobic001G491500 Sobic003G433600--Sobic008G178300 Sobic006G222901 Sobic006G222901 Sobic003G433600--Sobic006G222901 Sobic010G232700 Sobic010G232700 Sobic003G203100--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic003G203100--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic003G203100--Sobic006G085900 Sobic002G084400 Sobic002G084400 Sobic003G203100--Sobic002G084400 Sobic008G009300 Sobic008G009300 Sobic003G203100--Sobic008G009300 Sobic002G389200 Sobic002G389200 Sobic003G203100--Sobic002G389200 Sobic003G203100--Sobic001G490700 Sobic002G167400 Sobic002G167400 Sobic003G203100--Sobic002G167400 Sobic005G210700 Sobic005G210700 Sobic003G203100--Sobic005G210700 Sobic008G182500 Sobic008G182500 Sobic006G197500--Sobic008G182500 Sobic008G100950 Sobic008G100950 Sobic006G197500--Sobic008G100950 Sobic009G241966 Sobic009G241966 Sobic006G197500--Sobic009G241966 Sobic009G109101 Sobic009G109101 Sobic006G197500--Sobic009G109101 Sobic002G316000 Sobic002G316000 Sobic006G197500--Sobic002G316000 Sobic006G197500--Sobic009G237350 Sobic006G197500--Sobic001G490700 Sobic001G442800 Sobic001G442800 Sobic006G197500--Sobic001G442800 Sobic003G038000 Sobic003G038000 Sobic006G197500--Sobic003G038000 Sobic003G176100 Sobic003G176100 Sobic005G108300--Sobic003G176100 Sobic010G146200 Sobic010G146200 Sobic005G108300--Sobic010G146200 Sobic007G059300 Sobic007G059300 Sobic005G108300--Sobic007G059300 Sobic006G020600 Sobic006G020600 Sobic005G108300--Sobic006G020600 Sobic009G113600 Sobic009G113600 Sobic005G108300--Sobic009G113600 Sobic010G050600 Sobic010G050600 Sobic005G108300--Sobic010G050600 Sobic008G108900 Sobic008G108900 Sobic005G108300--Sobic008G108900 Sobic008G124100 Sobic008G124100 Sobic005G108300--Sobic008G124100 Sobic009G196700 Sobic009G196700 Sobic005G108300--Sobic009G196700 Sobic008G178500 Sobic008G178500 Sobic004G033300--Sobic008G178500 Sobic005G110523 Sobic005G110523 Sobic004G033300--Sobic005G110523 Sobic003G258900 Sobic003G258900 Sobic004G033300--Sobic003G258900 Sobic007G129401 Sobic007G129401 Sobic004G033300--Sobic007G129401 Sobic009G004700 Sobic009G004700 Sobic004G033300--Sobic009G004700 Sobic007G031800 Sobic007G031800 Sobic004G033300--Sobic007G031800 Sobic005G173366 Sobic005G173366 Sobic004G033300--Sobic005G173366 Sobic008G150200 Sobic008G150200 Sobic004G033300--Sobic008G150200 Sobic002G331000 Sobic002G331000 Sobic004G033300--Sobic002G331000
Octagon: transcription factors


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