Gene annotation
Transcriptome id Sobic.005G108300.1
Synonym Gretchen Hagen3, FIN219, SbGH3-12, JAR1, Sb05g010324
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment" (PubMedID : 20499123)
OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed
UniProt A0A1B6PRL7
Pfam PF03321
Panther DB PTHR31901 PTHR31901:SF13
NCBI CDD -
KEGG Orthology K14506; jasmonic acid-amino synthetase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G46370 : Auxin-responsive GH3 family protein
RAP-DB (Rice) LOC_Os01g12160.1 : OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed
MaizeGDB (Corn) Zm00025a035943
Brachypodium KQK03340
Barley HORVU3Hr1G029670.7 , HORVU3Hr1G029670.6 , HORVU3Hr1G029670.5 , HORVU3Hr1G029670.3 , HORVU3Hr1G029670.2 , HORVU3Hr1G029670.1 , HORVU3Hr1G029670.9 , HORVU3Hr1G029670.8 , HORVU3Hr1G029670.13 , HORVU3Hr1G029670.10
Wheat TraesCS3A02G145300 , TraesCS3B02G172400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G176100 expressed protein -
2 Sobic.010G146200 homeobox associated leucine zipper, putative, expressed -
3 Sobic.007G059300 - -
4 Sobic.006G020600 3-ketoacyl-CoA synthase 6, putative, expressed -
5 Sobic.009G113600 - -
6 Sobic.010G050600 - -
7 Sobic.008G108900 GRF zinc finger family protein, expressed -
8 Sobic.008G124100 - -
9 Sobic.009G196700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
10 Sobic.008G182500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thaumatin, putative, expressed -
11 Sobic.007G189800 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
12 Sobic.002G051400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed K00485: dimethylaniline monooxygenase (N-oxide forming)
13 Sobic.005G130100 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
14 Sobic.002G062300 expressed protein -
15 Sobic.009G026400 - -
16 Sobic.006G132200 CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
17 Sobic.008G031350 - -
18 Sobic.K024000 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
19 Sobic.005G003200 sugar-responsive gene(PubMedID : 25496467)@asparagine synthetase, putative, expressed K01953: asnB, asparagine synthase (glutamine-hydrolysing)
20 Sobic.009G078500 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic005G108300 Sobic005G108300 Sobic003G176100 Sobic003G176100 Sobic005G108300--Sobic003G176100 Sobic010G146200 Sobic010G146200 Sobic005G108300--Sobic010G146200 Sobic007G059300 Sobic007G059300 Sobic005G108300--Sobic007G059300 Sobic006G020600 Sobic006G020600 Sobic005G108300--Sobic006G020600 Sobic009G113600 Sobic009G113600 Sobic005G108300--Sobic009G113600 Sobic010G050600 Sobic010G050600 Sobic005G108300--Sobic010G050600 Sobic008G108900 Sobic008G108900 Sobic005G108300--Sobic008G108900 Sobic008G124100 Sobic008G124100 Sobic005G108300--Sobic008G124100 Sobic009G196700 Sobic009G196700 Sobic005G108300--Sobic009G196700 Sobic003G176100--Sobic010G146200 Sobic003G176100--Sobic009G113600 Sobic003G176100--Sobic008G108900 Sobic003G176100--Sobic007G059300 Sobic002G051400 Sobic002G051400 Sobic003G176100--Sobic002G051400 Sobic003G176100--Sobic010G050600 Sobic003G176100--Sobic009G196700 Sobic002G062300 Sobic002G062300 Sobic003G176100--Sobic002G062300 Sobic006G132200 Sobic006G132200 Sobic003G176100--Sobic006G132200 Sobic010G146200--Sobic003G176100 Sobic010G146200--Sobic009G113600 Sobic010G146200--Sobic010G050600 Sobic005G130100 Sobic005G130100 Sobic010G146200--Sobic005G130100 Sobic010G146200--Sobic007G059300 Sobic010G146200--Sobic002G051400 SobicK024000 SobicK024000 Sobic010G146200--SobicK024000 Sobic009G078500 Sobic009G078500 Sobic010G146200--Sobic009G078500 Sobic007G189800 Sobic007G189800 Sobic010G146200--Sobic007G189800 Sobic007G059300--Sobic002G062300 Sobic007G059300--Sobic009G113600 Sobic007G059300--Sobic009G196700 Sobic003G031750 Sobic003G031750 Sobic007G059300--Sobic003G031750 Sobic007G059300--SobicK024000 Sobic007G059300--Sobic008G108900 Sobic009G026400 Sobic009G026400 Sobic007G059300--Sobic009G026400 Sobic007G059300--Sobic006G132200 Sobic007G059300--Sobic002G051400 Sobic007G094600 Sobic007G094600 Sobic006G020600--Sobic007G094600 Sobic006G020500 Sobic006G020500 Sobic006G020600--Sobic006G020500 Sobic006G020600--Sobic002G051400 Sobic006G020600--Sobic008G124100 Sobic006G020600--Sobic010G146200 Sobic002G314600 Sobic002G314600 Sobic006G020600--Sobic002G314600 Sobic006G020600--Sobic009G078500 Sobic009G231300 Sobic009G231300 Sobic006G020600--Sobic009G231300 Sobic006G020600--Sobic003G176100 Sobic009G113600--Sobic002G062300 Sobic009G113600--Sobic007G059300 Sobic009G113600--SobicK024000 Sobic009G113600--Sobic009G196700 Sobic008G009500 Sobic008G009500 Sobic009G113600--Sobic008G009500 Sobic009G113600--Sobic008G108900 Sobic009G113600--Sobic003G031750 Sobic008G031350 Sobic008G031350 Sobic009G113600--Sobic008G031350 Sobic009G113600--Sobic010G146200 Sobic010G050600--Sobic010G146200 Sobic010G050600--Sobic009G113600 Sobic010G050600--Sobic003G176100 Sobic010G050600--Sobic005G130100 Sobic010G050600--SobicK024000 Sobic010G050600--Sobic008G031350 Sobic006G249000 Sobic006G249000 Sobic010G050600--Sobic006G249000 Sobic010G050600--Sobic007G059300 Sobic002G108800 Sobic002G108800 Sobic010G050600--Sobic002G108800 Sobic008G108900--Sobic006G132200 Sobic008G108900--Sobic009G196700 Sobic008G108900--Sobic002G062300 Sobic008G108900--Sobic009G113600 Sobic008G108900--Sobic007G059300 Sobic005G212600 Sobic005G212600 Sobic008G108900--Sobic005G212600 Sobic008G108900--Sobic003G176100 Sobic008G108900--Sobic002G051400 Sobic008G108900--Sobic003G031750 Sobic001G277000 Sobic001G277000 Sobic008G124100--Sobic001G277000 Sobic009G064766 Sobic009G064766 Sobic008G124100--Sobic009G064766 Sobic008G013900 Sobic008G013900 Sobic008G124100--Sobic008G013900 Sobic008G124100--Sobic007G189800 Sobic008G124100--Sobic003G176100 Sobic008G124100--Sobic010G146200 Sobic008G124100--Sobic006G020600 Sobic008G124100--Sobic002G051400 Sobic001G164200 Sobic001G164200 Sobic008G124100--Sobic001G164200 Sobic009G196700--Sobic009G113600 Sobic009G196700--Sobic008G108900 Sobic009G196700--Sobic007G059300 Sobic009G196700--Sobic006G132200 Sobic009G196700--Sobic002G062300 Sobic009G196700--Sobic003G031750 Sobic009G196700--SobicK024000 Sobic008G036500 Sobic008G036500 Sobic009G196700--Sobic008G036500 Sobic009G196700--Sobic003G176100
Octagon: transcription factors


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