Gene annotation
Transcriptome id Sobic.007G013200.2
Synonym Sb07g001200
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5YLY3
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF757
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G71490 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os08g02040.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU7Hr1G076360.24 , HORVU7Hr1G076360.25 , HORVU7Hr1G076360.26 , HORVU7Hr1G076360.27 , HORVU7Hr1G076360.20 , HORVU7Hr1G076360.21 , HORVU7Hr1G076360.22 , HORVU7Hr1G076360.23 , HORVU7Hr1G076360.28 , HORVU7Hr1G076360.29 , HORVU7Hr1G076360.19 , HORVU7Hr1G076360.18 , HORVU7Hr1G076360.11 , HORVU7Hr1G076360.10 , HORVU7Hr1G076360.13 , HORVU7Hr1G076360.12 , HORVU7Hr1G076360.15 , HORVU7Hr1G076360.14 , HORVU7Hr1G076360.17 , HORVU7Hr1G076360.16 , HORVU7Hr1G076360.8 , HORVU7Hr1G076360.5 , HORVU7Hr1G076360.4 , HORVU7Hr1G076360.7 , HORVU7Hr1G076360.6 , HORVU7Hr1G076360.1 , HORVU7Hr1G076360.3 , HORVU7Hr1G076360.2
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.007G013200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G399900 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
2 Sobic.003G433600 pentatricopeptide, putative, expressed -
3 Sobic.010G202900 expressed protein -
4 Sobic.005G110550 - -
5 Sobic.002G279200 - -
6 Sobic.009G139200 OsDegp7 - Putative Deg protease homologue, expressed -
7 Sobic.005G024600 Rf1, mitochondrial precursor, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
8 Sobic.007G183500 CC-NBS-LRR, putative, expressed -
9 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.002G292400 - -
11 Sobic.010G091366 - -
12 Sobic.004G338400 "TH1(Ortholog in rice:Li et al., 2012)"(PubMedID : 31659894)@DUF640 domain containing protein, putative, expressed -
13 Sobic.001G490700 pentatricopeptide, putative, expressed -
14 Sobic.002G358900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
15 Sobic.006G053500 expressed protein K10990: RMI1, RecQ-mediated genome instability protein 1
16 Sobic.001G043300 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
17 Sobic.001G200600 PPR repeat domain containing protein, putative, expressed -
18 Sobic.008G003400 OsGrx_S16 - glutaredoxin subgroup II, expressed -
19 Sobic.003G202700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.002G111700 tetratricopeptide-like helical, putative, expressed -


Gene co-expression network
sample Sobic007G013200 Sobic007G013200 Sobic003G399900 Sobic003G399900 Sobic007G013200--Sobic003G399900 Sobic003G433600 Sobic003G433600 Sobic007G013200--Sobic003G433600 Sobic010G202900 Sobic010G202900 Sobic007G013200--Sobic010G202900 Sobic005G110550 Sobic005G110550 Sobic007G013200--Sobic005G110550 Sobic002G279200 Sobic002G279200 Sobic007G013200--Sobic002G279200 Sobic009G139200 Sobic009G139200 Sobic007G013200--Sobic009G139200 Sobic005G024600 Sobic005G024600 Sobic007G013200--Sobic005G024600 Sobic007G183500 Sobic007G183500 Sobic007G013200--Sobic007G183500 Sobic003G203100 Sobic003G203100 Sobic007G013200--Sobic003G203100 Sobic006G053500 Sobic006G053500 Sobic003G399900--Sobic006G053500 Sobic003G399900--Sobic010G202900 Sobic003G399900--Sobic005G110550 Sobic003G399900--Sobic002G279200 Sobic003G316400 Sobic003G316400 Sobic003G399900--Sobic003G316400 Sobic004G338400 Sobic004G338400 Sobic003G399900--Sobic004G338400 Sobic005G008700 Sobic005G008700 Sobic003G399900--Sobic005G008700 Sobic010G091366 Sobic010G091366 Sobic003G399900--Sobic010G091366 Sobic008G072050 Sobic008G072050 Sobic003G399900--Sobic008G072050 Sobic004G250100 Sobic004G250100 Sobic003G433600--Sobic004G250100 Sobic003G202700 Sobic003G202700 Sobic003G433600--Sobic003G202700 Sobic001G200600 Sobic001G200600 Sobic003G433600--Sobic001G200600 Sobic003G433600--Sobic007G013200 Sobic001G490700 Sobic001G490700 Sobic003G433600--Sobic001G490700 Sobic003G032301 Sobic003G032301 Sobic003G433600--Sobic003G032301 Sobic001G491500 Sobic001G491500 Sobic003G433600--Sobic001G491500 Sobic008G178300 Sobic008G178300 Sobic003G433600--Sobic008G178300 Sobic006G222901 Sobic006G222901 Sobic003G433600--Sobic006G222901 Sobic010G202900--Sobic006G053500 Sobic010G202900--Sobic003G399900 Sobic010G202900--Sobic004G338400 Sobic010G103000 Sobic010G103000 Sobic010G202900--Sobic010G103000 Sobic010G202900--Sobic010G091366 Sobic003G429101 Sobic003G429101 Sobic010G202900--Sobic003G429101 Sobic006G236100 Sobic006G236100 Sobic010G202900--Sobic006G236100 Sobic007G075200 Sobic007G075200 Sobic010G202900--Sobic007G075200 Sobic003G422100 Sobic003G422100 Sobic010G202900--Sobic003G422100 Sobic010G046200 Sobic010G046200 Sobic005G110550--Sobic010G046200 Sobic002G358900 Sobic002G358900 Sobic005G110550--Sobic002G358900 Sobic005G110550--Sobic005G008700 Sobic005G110550--Sobic003G399900 Sobic003G089900 Sobic003G089900 Sobic005G110550--Sobic003G089900 Sobic005G110550--Sobic002G279200 Sobic001G001066 Sobic001G001066 Sobic005G110550--Sobic001G001066 Sobic003G162200 Sobic003G162200 Sobic005G110550--Sobic003G162200 Sobic006G115400 Sobic006G115400 Sobic005G110550--Sobic006G115400 Sobic002G279200--Sobic005G008700 Sobic002G279200--Sobic006G053500 Sobic003G049100 Sobic003G049100 Sobic002G279200--Sobic003G049100 Sobic004G082200 Sobic004G082200 Sobic002G279200--Sobic004G082200 Sobic009G147100 Sobic009G147100 Sobic002G279200--Sobic009G147100 Sobic010G262650 Sobic010G262650 Sobic002G279200--Sobic010G262650 Sobic001G530650 Sobic001G530650 Sobic002G279200--Sobic001G530650 Sobic001G497750 Sobic001G497750 Sobic002G279200--Sobic001G497750 Sobic001G543000 Sobic001G543000 Sobic002G279200--Sobic001G543000 Sobic004G078400 Sobic004G078400 Sobic009G139200--Sobic004G078400 Sobic009G205000 Sobic009G205000 Sobic009G139200--Sobic009G205000 Sobic009G139200--Sobic002G279200 Sobic009G139200--Sobic005G110550 Sobic009G139200--Sobic005G024600 Sobic002G292400 Sobic002G292400 Sobic009G139200--Sobic002G292400 Sobic009G139200--Sobic007G013200 Sobic009G139200--Sobic002G358900 Sobic003G051300 Sobic003G051300 Sobic009G139200--Sobic003G051300 Sobic005G024600--Sobic009G205000 Sobic003G303000 Sobic003G303000 Sobic005G024600--Sobic003G303000 Sobic005G024600--Sobic008G072050 Sobic005G024600--Sobic005G110550 Sobic007G202000 Sobic007G202000 Sobic005G024600--Sobic007G202000 Sobic004G041000 Sobic004G041000 Sobic005G024600--Sobic004G041000 Sobic005G024600--Sobic003G399900 Sobic005G024600--Sobic010G202900 Sobic007G172900 Sobic007G172900 Sobic005G024600--Sobic007G172900 Sobic010G252301 Sobic010G252301 Sobic007G183500--Sobic010G252301 Sobic010G131101 Sobic010G131101 Sobic007G183500--Sobic010G131101 Sobic003G318350 Sobic003G318350 Sobic007G183500--Sobic003G318350 Sobic001G325500 Sobic001G325500 Sobic007G183500--Sobic001G325500 Sobic009G055700 Sobic009G055700 Sobic007G183500--Sobic009G055700 Sobic002G124766 Sobic002G124766 Sobic007G183500--Sobic002G124766 Sobic003G348300 Sobic003G348300 Sobic007G183500--Sobic003G348300 Sobic004G061300 Sobic004G061300 Sobic007G183500--Sobic004G061300 Sobic010G045966 Sobic010G045966 Sobic007G183500--Sobic010G045966 Sobic010G232700 Sobic010G232700 Sobic003G203100--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic003G203100--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic003G203100--Sobic006G085900 Sobic002G084400 Sobic002G084400 Sobic003G203100--Sobic002G084400 Sobic008G009300 Sobic008G009300 Sobic003G203100--Sobic008G009300 Sobic002G389200 Sobic002G389200 Sobic003G203100--Sobic002G389200 Sobic003G203100--Sobic001G490700 Sobic002G167400 Sobic002G167400 Sobic003G203100--Sobic002G167400 Sobic005G210700 Sobic005G210700 Sobic003G203100--Sobic005G210700
Octagon: transcription factors


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