Gene annotation
Transcriptome id Sobic.005G024600.1
Synonym Sb05g002040
Functional annotation Rf1, mitochondrial precursor, putative, expressed
UniProt C5Y420
Pfam PF01535 PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF302
NCBI CDD -
KEGG Orthology K17964; leucine-rich PPR motif-containing protein, mitochondrial
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G63130 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os10g35240.1 : Rf1, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G205000 pentatricopeptide repeat protein PPR986-12, putative, expressed -
2 Sobic.003G303000 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
3 Sobic.008G072050 - -
4 Sobic.005G110550 - -
5 Sobic.007G202000 pumilio domain-containing protein PPD1, putative, expressed -
6 Sobic.004G041000 uncharacterized Cys-rich domain containing protein, putative, expressed -
7 Sobic.003G399900 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
8 Sobic.010G202900 expressed protein -
9 Sobic.007G172900 expressed protein -
10 Sobic.010G103000 expressed protein -
11 Sobic.004G078400 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed -
12 Sobic.005G008700 pentatricopeptide repeat domain containing protein, putative, expressed -
13 Sobic.006G053500 expressed protein K10990: RMI1, RecQ-mediated genome instability protein 1
14 Sobic.002G358900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
15 Sobic.007G143900 expressed protein -
16 Sobic.001G307450 - -
17 Sobic.004G338400 "TH1(Ortholog in rice:Li et al., 2012)"(PubMedID : 31659894)@DUF640 domain containing protein, putative, expressed -
18 Sobic.008G123400 HEAT repeat family protein, putative, expressed K11491: condensin-2 complex subunit D3
19 Sobic.003G049100 prolyl 4-hydroxylase, putative, expressed K00472: prolyl 4-hydroxylase
20 Sobic.010G248100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ATEXO70G1, putative, expressed K07195: EXOC7, exocyst complex component 7


Gene co-expression network
sample Sobic005G024600 Sobic005G024600 Sobic009G205000 Sobic009G205000 Sobic005G024600--Sobic009G205000 Sobic003G303000 Sobic003G303000 Sobic005G024600--Sobic003G303000 Sobic008G072050 Sobic008G072050 Sobic005G024600--Sobic008G072050 Sobic005G110550 Sobic005G110550 Sobic005G024600--Sobic005G110550 Sobic007G202000 Sobic007G202000 Sobic005G024600--Sobic007G202000 Sobic004G041000 Sobic004G041000 Sobic005G024600--Sobic004G041000 Sobic003G399900 Sobic003G399900 Sobic005G024600--Sobic003G399900 Sobic010G202900 Sobic010G202900 Sobic005G024600--Sobic010G202900 Sobic007G172900 Sobic007G172900 Sobic005G024600--Sobic007G172900 Sobic009G205000--Sobic005G024600 Sobic001G477350 Sobic001G477350 Sobic009G205000--Sobic001G477350 Sobic004G078400 Sobic004G078400 Sobic009G205000--Sobic004G078400 Sobic009G205000--Sobic007G172900 Sobic006G123600 Sobic006G123600 Sobic009G205000--Sobic006G123600 Sobic010G103000 Sobic010G103000 Sobic009G205000--Sobic010G103000 Sobic010G046200 Sobic010G046200 Sobic009G205000--Sobic010G046200 Sobic002G358900 Sobic002G358900 Sobic009G205000--Sobic002G358900 Sobic009G066000 Sobic009G066000 Sobic009G205000--Sobic009G066000 Sobic003G429101 Sobic003G429101 Sobic003G303000--Sobic003G429101 Sobic005G163450 Sobic005G163450 Sobic003G303000--Sobic005G163450 Sobic006G261000 Sobic006G261000 Sobic003G303000--Sobic006G261000 Sobic001G388100 Sobic001G388100 Sobic003G303000--Sobic001G388100 Sobic003G241400 Sobic003G241400 Sobic003G303000--Sobic003G241400 Sobic005G156800 Sobic005G156800 Sobic003G303000--Sobic005G156800 Sobic002G380750 Sobic002G380750 Sobic003G303000--Sobic002G380750 Sobic003G303000--Sobic004G041000 Sobic009G214700 Sobic009G214700 Sobic003G303000--Sobic009G214700 Sobic008G072050--Sobic005G024600 Sobic008G072050--Sobic004G041000 Sobic008G072050--Sobic003G399900 Sobic001G307450 Sobic001G307450 Sobic008G072050--Sobic001G307450 Sobic007G107200 Sobic007G107200 Sobic008G072050--Sobic007G107200 Sobic003G289000 Sobic003G289000 Sobic008G072050--Sobic003G289000 Sobic003G384100 Sobic003G384100 Sobic008G072050--Sobic003G384100 Sobic007G143900 Sobic007G143900 Sobic008G072050--Sobic007G143900 Sobic008G072050--Sobic003G303000 Sobic005G110550--Sobic010G046200 Sobic005G110550--Sobic002G358900 Sobic005G008700 Sobic005G008700 Sobic005G110550--Sobic005G008700 Sobic005G110550--Sobic003G399900 Sobic003G089900 Sobic003G089900 Sobic005G110550--Sobic003G089900 Sobic002G279200 Sobic002G279200 Sobic005G110550--Sobic002G279200 Sobic001G001066 Sobic001G001066 Sobic005G110550--Sobic001G001066 Sobic003G162200 Sobic003G162200 Sobic005G110550--Sobic003G162200 Sobic006G115400 Sobic006G115400 Sobic005G110550--Sobic006G115400 Sobic007G202000--Sobic010G103000 Sobic001G528000 Sobic001G528000 Sobic007G202000--Sobic001G528000 Sobic003G399166 Sobic003G399166 Sobic007G202000--Sobic003G399166 Sobic007G202000--Sobic004G078400 Sobic007G202000--Sobic005G163450 Sobic007G075200 Sobic007G075200 Sobic007G202000--Sobic007G075200 Sobic007G202000--Sobic003G289000 Sobic007G120100 Sobic007G120100 Sobic007G202000--Sobic007G120100 Sobic007G202000--Sobic005G156800 Sobic003G049000 Sobic003G049000 Sobic004G041000--Sobic003G049000 Sobic004G041000--Sobic003G303000 Sobic006G234500 Sobic006G234500 Sobic004G041000--Sobic006G234500 Sobic003G063600 Sobic003G063600 Sobic004G041000--Sobic003G063600 Sobic002G348200 Sobic002G348200 Sobic004G041000--Sobic002G348200 Sobic004G041000--Sobic005G008700 Sobic003G049100 Sobic003G049100 Sobic004G041000--Sobic003G049100 Sobic004G041000--Sobic003G429101 Sobic004G041000--Sobic007G172900 Sobic006G053500 Sobic006G053500 Sobic003G399900--Sobic006G053500 Sobic003G399900--Sobic010G202900 Sobic003G399900--Sobic005G110550 Sobic003G399900--Sobic002G279200 Sobic003G316400 Sobic003G316400 Sobic003G399900--Sobic003G316400 Sobic004G338400 Sobic004G338400 Sobic003G399900--Sobic004G338400 Sobic003G399900--Sobic005G008700 Sobic010G091366 Sobic010G091366 Sobic003G399900--Sobic010G091366 Sobic003G399900--Sobic008G072050 Sobic010G202900--Sobic006G053500 Sobic010G202900--Sobic003G399900 Sobic010G202900--Sobic004G338400 Sobic010G202900--Sobic010G103000 Sobic010G202900--Sobic010G091366 Sobic010G202900--Sobic003G429101 Sobic006G236100 Sobic006G236100 Sobic010G202900--Sobic006G236100 Sobic010G202900--Sobic007G075200 Sobic003G422100 Sobic003G422100 Sobic010G202900--Sobic003G422100 Sobic004G056100 Sobic004G056100 Sobic007G172900--Sobic004G056100 Sobic007G172900--Sobic006G115400 Sobic007G172900--Sobic009G066000 Sobic007G139950 Sobic007G139950 Sobic007G172900--Sobic007G139950 Sobic007G172900--Sobic005G008700 Sobic003G331550 Sobic003G331550 Sobic007G172900--Sobic003G331550 Sobic007G172900--Sobic010G046200 Sobic007G172900--Sobic003G162200 Sobic007G220066 Sobic007G220066 Sobic007G172900--Sobic007G220066
Octagon: transcription factors


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