Gene annotation
Transcriptome id Sobic.005G008700.1
Synonym Sb05g000810
Functional annotation pentatricopeptide repeat domain containing protein, putative, expressed
UniProt C5Y329
Pfam PF01535 PF13812
Panther DB PTHR24015 PTHR24015:SF767
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G12700 : ATP binding;nucleic acid binding;helicases
RAP-DB (Rice) LOC_Os11g39360.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a033287
Brachypodium PNT65578
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G049100 prolyl 4-hydroxylase, putative, expressed K00472: prolyl 4-hydroxylase
2 Sobic.006G053500 expressed protein K10990: RMI1, RecQ-mediated genome instability protein 1
3 Sobic.003G063600 expressed protein -
4 Sobic.003G162200 IPP transferase, putative, expressed K10760: adenylate dimethylallyltransferase (cytokinin synthase)
5 Sobic.004G196000 late embryogenesis abundant protein D-34, putative, expressed -
6 Sobic.004G289700 C2 domain containing protein, putative, expressed -
7 Sobic.001G218701 - -
8 Sobic.001G493300 glycerol-3-phosphate acyltransferase, putative, expressed -
9 Sobic.005G082000 DEFL8 - Defensin and Defensin-like DEFL family -
10 Sobic.003G046900 expressed protein -
11 Sobic.007G141001 - -
12 Sobic.001G379800 OsFBX72 - F-box domain containing protein, expressed -
13 Sobic.003G058400 annexin, putative, expressed -
14 Sobic.001G452400 OsFBX81 - F-box domain containing protein, expressed -
15 Sobic.002G081000 OsMADS70 - MADS-box family gene with M-alpha type-box, expressed -
16 Sobic.002G380750 - -
17 Sobic.008G192200 - -
18 Sobic.005G156800 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
19 Sobic.003G091100 seven in absentia protein family domain containing protein, expressed -
20 Sobic.008G192100 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -


Gene co-expression network
sample Sobic005G008700 Sobic005G008700 Sobic003G049100 Sobic003G049100 Sobic005G008700--Sobic003G049100 Sobic006G053500 Sobic006G053500 Sobic005G008700--Sobic006G053500 Sobic003G063600 Sobic003G063600 Sobic005G008700--Sobic003G063600 Sobic003G162200 Sobic003G162200 Sobic005G008700--Sobic003G162200 Sobic004G196000 Sobic004G196000 Sobic005G008700--Sobic004G196000 Sobic004G289700 Sobic004G289700 Sobic005G008700--Sobic004G289700 Sobic001G218701 Sobic001G218701 Sobic005G008700--Sobic001G218701 Sobic001G493300 Sobic001G493300 Sobic005G008700--Sobic001G493300 Sobic005G082000 Sobic005G082000 Sobic005G008700--Sobic005G082000 Sobic003G049100--Sobic001G218701 Sobic002G081000 Sobic002G081000 Sobic003G049100--Sobic002G081000 Sobic003G058400 Sobic003G058400 Sobic003G049100--Sobic003G058400 Sobic008G192200 Sobic008G192200 Sobic003G049100--Sobic008G192200 Sobic001G272300 Sobic001G272300 Sobic003G049100--Sobic001G272300 Sobic003G034250 Sobic003G034250 Sobic006G053500--Sobic003G034250 Sobic008G154000 Sobic008G154000 Sobic006G053500--Sobic008G154000 Sobic003G091100 Sobic003G091100 Sobic006G053500--Sobic003G091100 Sobic010G229200 Sobic010G229200 Sobic006G053500--Sobic010G229200 Sobic006G053500--Sobic001G218701 Sobic007G024900 Sobic007G024900 Sobic006G053500--Sobic007G024900 Sobic007G100275 Sobic007G100275 Sobic006G053500--Sobic007G100275 Sobic006G053500--Sobic003G058400 SobicK042700 SobicK042700 Sobic006G053500--SobicK042700 Sobic003G063600--Sobic001G493300 Sobic003G063600--Sobic003G058400 Sobic003G063600--Sobic004G289700 Sobic001G452400 Sobic001G452400 Sobic003G063600--Sobic001G452400 Sobic003G141550 Sobic003G141550 Sobic003G063600--Sobic003G141550 Sobic003G063600--Sobic004G196000 Sobic008G192100 Sobic008G192100 Sobic003G063600--Sobic008G192100 Sobic003G063600--Sobic008G192200 Sobic003G063600--Sobic002G081000 Sobic007G139950 Sobic007G139950 Sobic003G162200--Sobic007G139950 Sobic007G141001 Sobic007G141001 Sobic003G162200--Sobic007G141001 Sobic003G162200--Sobic003G049100 Sobic003G162200--Sobic003G034250 Sobic003G162200--Sobic001G218701 Sobic003G162200--Sobic008G154000 Sobic003G331550 Sobic003G331550 Sobic003G162200--Sobic003G331550 Sobic009G066000 Sobic009G066000 Sobic003G162200--Sobic009G066000 Sobic003G162200--Sobic001G272300 Sobic004G196000--Sobic008G192100 Sobic004G196000--Sobic001G493300 Sobic004G196000--Sobic008G192200 Sobic004G196000--Sobic001G272300 Sobic004G289700--Sobic003G058400 Sobic004G289700--Sobic007G100275 Sobic009G150100 Sobic009G150100 Sobic004G289700--Sobic009G150100 Sobic004G289700--Sobic003G091100 Sobic004G289700--SobicK042700 Sobic004G289700--Sobic001G272300 Sobic001G218701--Sobic001G272300 Sobic001G493300--Sobic008G192200 Sobic001G493300--Sobic001G272300 Sobic005G082000--Sobic004G289700 Sobic005G082000--Sobic003G063600 Sobic005G082000--Sobic003G058400 Sobic005G082000--Sobic001G272300
Octagon: transcription factors


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