Gene annotation
Transcriptome id Sobic.009G205000.1
Synonym
Functional annotation pentatricopeptide repeat protein PPR986-12, putative, expressed
UniProt A0A1Z5R4H0
Pfam PF14432 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF481
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G02750 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g05720.1 : pentatricopeptide repeat protein PPR986-12, putative, expressed
MaizeGDB (Corn) Zm00025a044299
Brachypodium PNT60632 , PNT60631 , PNT60630
Barley HORVU1Hr1G082120.4 , HORVU1Hr1G082120.5 , HORVU1Hr1G082120.3 , HORVU1Hr1G082120.8 , HORVU1Hr1G082120.2 , HORVU1Hr1G082120.6 , HORVU1Hr1G082120.7 , HORVU1Hr1G082120.1
Wheat -
Populus -


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cDNA sequences
Sobic.009G205000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G024600 Rf1, mitochondrial precursor, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
2 Sobic.001G477350 - -
3 Sobic.004G078400 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed -
4 Sobic.007G172900 expressed protein -
5 Sobic.006G123600 transcriptional regulator Sir2 family protein, putative, expressed K11416: SIRT6, NAD+-dependent protein deacetylase sirtuin 6
6 Sobic.010G103000 expressed protein -
7 Sobic.010G046200 NBS-LRR type disease resistance protein, putative, expressed -
8 Sobic.002G358900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
9 Sobic.009G066000 hydrolase, alpha/beta fold family domain containing protein, expressed -
10 Sobic.007G139950 - -
11 Sobic.007G220066 - -
12 Sobic.002G105501 - -
13 Sobic.006G115400 ZOS4-08 - C2H2 zinc finger protein, expressed -
14 Sobic.004G056100 expressed protein -
15 Sobic.005G110550 - -
16 Sobic.003G089900 seven in absentia protein family protein, putative, expressed -
17 Sobic.001G112300 OsCam3 - Calmodulin, expressed K02183: calmodulin
18 Sobic.003G049100 prolyl 4-hydroxylase, putative, expressed K00472: prolyl 4-hydroxylase
19 Sobic.009G139200 OsDegp7 - Putative Deg protease homologue, expressed -
20 Sobic.003G162200 IPP transferase, putative, expressed K10760: adenylate dimethylallyltransferase (cytokinin synthase)


Gene co-expression network
sample Sobic009G205000 Sobic009G205000 Sobic005G024600 Sobic005G024600 Sobic009G205000--Sobic005G024600 Sobic001G477350 Sobic001G477350 Sobic009G205000--Sobic001G477350 Sobic004G078400 Sobic004G078400 Sobic009G205000--Sobic004G078400 Sobic007G172900 Sobic007G172900 Sobic009G205000--Sobic007G172900 Sobic006G123600 Sobic006G123600 Sobic009G205000--Sobic006G123600 Sobic010G103000 Sobic010G103000 Sobic009G205000--Sobic010G103000 Sobic010G046200 Sobic010G046200 Sobic009G205000--Sobic010G046200 Sobic002G358900 Sobic002G358900 Sobic009G205000--Sobic002G358900 Sobic009G066000 Sobic009G066000 Sobic009G205000--Sobic009G066000 Sobic005G024600--Sobic009G205000 Sobic003G303000 Sobic003G303000 Sobic005G024600--Sobic003G303000 Sobic008G072050 Sobic008G072050 Sobic005G024600--Sobic008G072050 Sobic005G110550 Sobic005G110550 Sobic005G024600--Sobic005G110550 Sobic007G202000 Sobic007G202000 Sobic005G024600--Sobic007G202000 Sobic004G041000 Sobic004G041000 Sobic005G024600--Sobic004G041000 Sobic003G399900 Sobic003G399900 Sobic005G024600--Sobic003G399900 Sobic010G202900 Sobic010G202900 Sobic005G024600--Sobic010G202900 Sobic005G024600--Sobic007G172900 Sobic001G112300 Sobic001G112300 Sobic001G477350--Sobic001G112300 Sobic010G262950 Sobic010G262950 Sobic001G477350--Sobic010G262950 Sobic001G477350--Sobic009G066000 Sobic001G477350--Sobic009G205000 Sobic007G069750 Sobic007G069750 Sobic001G477350--Sobic007G069750 Sobic007G139950 Sobic007G139950 Sobic001G477350--Sobic007G139950 Sobic007G220066 Sobic007G220066 Sobic001G477350--Sobic007G220066 Sobic002G105501 Sobic002G105501 Sobic001G477350--Sobic002G105501 Sobic002G213050 Sobic002G213050 Sobic001G477350--Sobic002G213050 Sobic004G078400--Sobic010G103000 Sobic010G129900 Sobic010G129900 Sobic004G078400--Sobic010G129900 Sobic003G188900 Sobic003G188900 Sobic004G078400--Sobic003G188900 Sobic004G078400--Sobic007G069750 Sobic005G199500 Sobic005G199500 Sobic004G078400--Sobic005G199500 Sobic004G078400--Sobic001G112300 Sobic004G078400--Sobic002G213050 Sobic001G221750 Sobic001G221750 Sobic004G078400--Sobic001G221750 Sobic004G055400 Sobic004G055400 Sobic004G078400--Sobic004G055400 Sobic004G056100 Sobic004G056100 Sobic007G172900--Sobic004G056100 Sobic006G115400 Sobic006G115400 Sobic007G172900--Sobic006G115400 Sobic007G172900--Sobic009G066000 Sobic007G172900--Sobic007G139950 Sobic005G008700 Sobic005G008700 Sobic007G172900--Sobic005G008700 Sobic003G331550 Sobic003G331550 Sobic007G172900--Sobic003G331550 Sobic007G172900--Sobic010G046200 Sobic003G162200 Sobic003G162200 Sobic007G172900--Sobic003G162200 Sobic007G172900--Sobic007G220066 Sobic006G123600--Sobic003G188900 Sobic006G123600--Sobic009G205000 Sobic006G123600--Sobic004G078400 Sobic001G421100 Sobic001G421100 Sobic006G123600--Sobic001G421100 Sobic006G123600--Sobic001G477350 Sobic001G175500 Sobic001G175500 Sobic006G123600--Sobic001G175500 Sobic006G155400 Sobic006G155400 Sobic006G123600--Sobic006G155400 Sobic002G240200 Sobic002G240200 Sobic006G123600--Sobic002G240200 Sobic007G032200 Sobic007G032200 Sobic006G123600--Sobic007G032200 Sobic007G075200 Sobic007G075200 Sobic010G103000--Sobic007G075200 Sobic006G261000 Sobic006G261000 Sobic010G103000--Sobic006G261000 Sobic010G103000--Sobic002G213050 Sobic001G528000 Sobic001G528000 Sobic010G103000--Sobic001G528000 Sobic010G103000--Sobic004G078400 Sobic003G049100 Sobic003G049100 Sobic010G103000--Sobic003G049100 Sobic010G103000--Sobic003G188900 Sobic006G053500 Sobic006G053500 Sobic010G103000--Sobic006G053500 Sobic010G103000--Sobic005G199500 Sobic003G386350 Sobic003G386350 Sobic010G046200--Sobic003G386350 Sobic010G046200--Sobic003G331550 Sobic010G046200--Sobic009G066000 Sobic010G046200--Sobic007G139950 Sobic010G046200--Sobic006G115400 Sobic010G046200--Sobic007G220066 Sobic010G046200--Sobic002G105501 Sobic010G046200--Sobic007G172900 Sobic009G244450 Sobic009G244450 Sobic010G046200--Sobic009G244450 Sobic002G358900--Sobic005G110550 Sobic002G037900 Sobic002G037900 Sobic002G358900--Sobic002G037900 Sobic004G199400 Sobic004G199400 Sobic002G358900--Sobic004G199400 Sobic001G491700 Sobic001G491700 Sobic002G358900--Sobic001G491700 Sobic002G358900--Sobic009G205000 Sobic002G358900--Sobic005G024600 Sobic006G085800 Sobic006G085800 Sobic002G358900--Sobic006G085800 Sobic010G123100 Sobic010G123100 Sobic002G358900--Sobic010G123100 Sobic002G358900--Sobic003G399900 Sobic009G066000--Sobic007G139950 Sobic009G066000--Sobic007G220066 Sobic009G066000--Sobic002G105501 Sobic009G066000--Sobic006G115400 Sobic009G066000--Sobic003G331550 Sobic009G066000--Sobic003G162200 Sobic002G341400 Sobic002G341400 Sobic009G066000--Sobic002G341400 Sobic009G066000--Sobic010G046200 Sobic009G066000--Sobic004G056100
Octagon: transcription factors


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