Gene annotation
Transcriptome id Sobic.005G110550.1
Synonym -
Functional annotation -
UniProt C6JS32
Pfam PF13812 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF687
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G66520 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os11g29360.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a029742
Brachypodium -
Barley HORVU1Hr1G087370.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G046200 NBS-LRR type disease resistance protein, putative, expressed -
2 Sobic.002G358900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
3 Sobic.005G008700 pentatricopeptide repeat domain containing protein, putative, expressed -
4 Sobic.003G399900 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
5 Sobic.003G089900 seven in absentia protein family protein, putative, expressed -
6 Sobic.002G279200 - -
7 Sobic.001G001066 - -
8 Sobic.003G162200 IPP transferase, putative, expressed K10760: adenylate dimethylallyltransferase (cytokinin synthase)
9 Sobic.006G115400 ZOS4-08 - C2H2 zinc finger protein, expressed -
10 Sobic.007G139950 - -
11 Sobic.003G331550 - -
12 Sobic.003G386350 - -
13 Sobic.009G066000 hydrolase, alpha/beta fold family domain containing protein, expressed -
14 Sobic.006G053500 expressed protein K10990: RMI1, RecQ-mediated genome instability protein 1
15 Sobic.007G172900 expressed protein -
16 Sobic.009G244450 - -
17 Sobic.005G024600 Rf1, mitochondrial precursor, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
18 Sobic.003G049100 prolyl 4-hydroxylase, putative, expressed K00472: prolyl 4-hydroxylase
19 Sobic.006G084701 - -
20 Sobic.005G028200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -


Gene co-expression network
sample Sobic005G110550 Sobic005G110550 Sobic010G046200 Sobic010G046200 Sobic005G110550--Sobic010G046200 Sobic002G358900 Sobic002G358900 Sobic005G110550--Sobic002G358900 Sobic005G008700 Sobic005G008700 Sobic005G110550--Sobic005G008700 Sobic003G399900 Sobic003G399900 Sobic005G110550--Sobic003G399900 Sobic003G089900 Sobic003G089900 Sobic005G110550--Sobic003G089900 Sobic002G279200 Sobic002G279200 Sobic005G110550--Sobic002G279200 Sobic001G001066 Sobic001G001066 Sobic005G110550--Sobic001G001066 Sobic003G162200 Sobic003G162200 Sobic005G110550--Sobic003G162200 Sobic006G115400 Sobic006G115400 Sobic005G110550--Sobic006G115400 Sobic003G386350 Sobic003G386350 Sobic010G046200--Sobic003G386350 Sobic003G331550 Sobic003G331550 Sobic010G046200--Sobic003G331550 Sobic009G066000 Sobic009G066000 Sobic010G046200--Sobic009G066000 Sobic007G139950 Sobic007G139950 Sobic010G046200--Sobic007G139950 Sobic010G046200--Sobic006G115400 Sobic007G220066 Sobic007G220066 Sobic010G046200--Sobic007G220066 Sobic002G105501 Sobic002G105501 Sobic010G046200--Sobic002G105501 Sobic007G172900 Sobic007G172900 Sobic010G046200--Sobic007G172900 Sobic009G244450 Sobic009G244450 Sobic010G046200--Sobic009G244450 Sobic002G358900--Sobic005G110550 Sobic002G037900 Sobic002G037900 Sobic002G358900--Sobic002G037900 Sobic004G199400 Sobic004G199400 Sobic002G358900--Sobic004G199400 Sobic001G491700 Sobic001G491700 Sobic002G358900--Sobic001G491700 Sobic009G205000 Sobic009G205000 Sobic002G358900--Sobic009G205000 Sobic005G024600 Sobic005G024600 Sobic002G358900--Sobic005G024600 Sobic006G085800 Sobic006G085800 Sobic002G358900--Sobic006G085800 Sobic010G123100 Sobic010G123100 Sobic002G358900--Sobic010G123100 Sobic002G358900--Sobic003G399900 Sobic003G049100 Sobic003G049100 Sobic005G008700--Sobic003G049100 Sobic006G053500 Sobic006G053500 Sobic005G008700--Sobic006G053500 Sobic003G063600 Sobic003G063600 Sobic005G008700--Sobic003G063600 Sobic005G008700--Sobic003G162200 Sobic004G196000 Sobic004G196000 Sobic005G008700--Sobic004G196000 Sobic004G289700 Sobic004G289700 Sobic005G008700--Sobic004G289700 Sobic001G218701 Sobic001G218701 Sobic005G008700--Sobic001G218701 Sobic001G493300 Sobic001G493300 Sobic005G008700--Sobic001G493300 Sobic005G082000 Sobic005G082000 Sobic005G008700--Sobic005G082000 Sobic003G399900--Sobic006G053500 Sobic010G202900 Sobic010G202900 Sobic003G399900--Sobic010G202900 Sobic003G399900--Sobic005G110550 Sobic003G399900--Sobic002G279200 Sobic003G316400 Sobic003G316400 Sobic003G399900--Sobic003G316400 Sobic004G338400 Sobic004G338400 Sobic003G399900--Sobic004G338400 Sobic003G399900--Sobic005G008700 Sobic010G091366 Sobic010G091366 Sobic003G399900--Sobic010G091366 Sobic008G072050 Sobic008G072050 Sobic003G399900--Sobic008G072050 Sobic003G089900--Sobic003G386350 Sobic003G089900--Sobic007G220066 Sobic004G056100 Sobic004G056100 Sobic003G089900--Sobic004G056100 Sobic003G089900--Sobic002G105501 Sobic003G089900--Sobic010G046200 Sobic003G089900--Sobic001G001066 Sobic003G089900--Sobic009G066000 Sobic003G089900--Sobic003G331550 Sobic003G089900--Sobic007G172900 Sobic002G279200--Sobic005G008700 Sobic002G279200--Sobic006G053500 Sobic002G279200--Sobic003G049100 Sobic004G082200 Sobic004G082200 Sobic002G279200--Sobic004G082200 Sobic009G147100 Sobic009G147100 Sobic002G279200--Sobic009G147100 Sobic010G262650 Sobic010G262650 Sobic002G279200--Sobic010G262650 Sobic001G530650 Sobic001G530650 Sobic002G279200--Sobic001G530650 Sobic001G497750 Sobic001G497750 Sobic002G279200--Sobic001G497750 Sobic001G543000 Sobic001G543000 Sobic002G279200--Sobic001G543000 Sobic003G242300 Sobic003G242300 Sobic001G001066--Sobic003G242300 Sobic001G001066--Sobic009G244450 Sobic001G001066--Sobic003G386350 Sobic001G137050 Sobic001G137050 Sobic001G001066--Sobic001G137050 Sobic003G440100 Sobic003G440100 Sobic001G001066--Sobic003G440100 Sobic005G137800 Sobic005G137800 Sobic001G001066--Sobic005G137800 Sobic002G223050 Sobic002G223050 Sobic001G001066--Sobic002G223050 Sobic001G250800 Sobic001G250800 Sobic001G001066--Sobic001G250800 Sobic003G318350 Sobic003G318350 Sobic001G001066--Sobic003G318350 Sobic003G162200--Sobic007G139950 Sobic007G141001 Sobic007G141001 Sobic003G162200--Sobic007G141001 Sobic003G162200--Sobic003G049100 Sobic003G034250 Sobic003G034250 Sobic003G162200--Sobic003G034250 Sobic003G162200--Sobic001G218701 Sobic008G154000 Sobic008G154000 Sobic003G162200--Sobic008G154000 Sobic003G162200--Sobic003G331550 Sobic003G162200--Sobic009G066000 Sobic001G272300 Sobic001G272300 Sobic003G162200--Sobic001G272300 Sobic006G115400--Sobic007G139950 Sobic006G115400--Sobic009G066000 Sobic006G115400--Sobic003G331550 Sobic006G115400--Sobic003G162200 Sobic006G115400--Sobic007G220066 Sobic006G115400--Sobic002G105501 Sobic002G341400 Sobic002G341400 Sobic006G115400--Sobic002G341400 Sobic006G115400--Sobic007G172900 Sobic006G115400--Sobic003G049100
Octagon: transcription factors


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