Gene annotation
Transcriptome id Sobic.002G358900.3
Synonym Sb02g037960
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide repeat domain containing protein, putative, expressed
UniProt A0A1W0W6Z5
Pfam PF14432 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF285
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G25360 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os07g39910.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a048583
Brachypodium KQK15464
Barley HORVU2Hr1G035300.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110550 - -
2 Sobic.002G037900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.004G199400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat protein PPR986-12, putative, expressed -
4 Sobic.001G491700 PPR repeat domain containing protein, putative, expressed -
5 Sobic.009G205000 pentatricopeptide repeat protein PPR986-12, putative, expressed -
6 Sobic.005G024600 Rf1, mitochondrial precursor, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
7 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.010G123100 transporter-related, putative, expressed -
9 Sobic.003G399900 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
10 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.001G478900 pentatricopeptide, putative, expressed -
12 Sobic.003G089900 seven in absentia protein family protein, putative, expressed -
13 Sobic.008G041000 expressed protein -
14 Sobic.010G046200 NBS-LRR type disease resistance protein, putative, expressed -
15 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.006G084701 - -
17 Sobic.001G069300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.002G136300 calmodulin-binding heat-shock protein, putative, expressed -
19 Sobic.009G139200 OsDegp7 - Putative Deg protease homologue, expressed -
20 Sobic.003G120200 - -


Gene co-expression network
sample Sobic002G358900 Sobic002G358900 Sobic005G110550 Sobic005G110550 Sobic002G358900--Sobic005G110550 Sobic002G037900 Sobic002G037900 Sobic002G358900--Sobic002G037900 Sobic004G199400 Sobic004G199400 Sobic002G358900--Sobic004G199400 Sobic001G491700 Sobic001G491700 Sobic002G358900--Sobic001G491700 Sobic009G205000 Sobic009G205000 Sobic002G358900--Sobic009G205000 Sobic005G024600 Sobic005G024600 Sobic002G358900--Sobic005G024600 Sobic006G085800 Sobic006G085800 Sobic002G358900--Sobic006G085800 Sobic010G123100 Sobic010G123100 Sobic002G358900--Sobic010G123100 Sobic003G399900 Sobic003G399900 Sobic002G358900--Sobic003G399900 Sobic010G046200 Sobic010G046200 Sobic005G110550--Sobic010G046200 Sobic005G110550--Sobic002G358900 Sobic005G008700 Sobic005G008700 Sobic005G110550--Sobic005G008700 Sobic005G110550--Sobic003G399900 Sobic003G089900 Sobic003G089900 Sobic005G110550--Sobic003G089900 Sobic002G279200 Sobic002G279200 Sobic005G110550--Sobic002G279200 Sobic001G001066 Sobic001G001066 Sobic005G110550--Sobic001G001066 Sobic003G162200 Sobic003G162200 Sobic005G110550--Sobic003G162200 Sobic006G115400 Sobic006G115400 Sobic005G110550--Sobic006G115400 Sobic002G037900--Sobic002G358900 Sobic002G037900--Sobic003G089900 Sobic002G037900--Sobic005G110550 Sobic002G037900--Sobic010G046200 Sobic005G151000 Sobic005G151000 Sobic002G037900--Sobic005G151000 Sobic006G084701 Sobic006G084701 Sobic002G037900--Sobic006G084701 Sobic002G037900--Sobic004G199400 Sobic009G096566 Sobic009G096566 Sobic002G037900--Sobic009G096566 Sobic002G095800 Sobic002G095800 Sobic002G037900--Sobic002G095800 Sobic004G199400--Sobic002G358900 Sobic003G142400 Sobic003G142400 Sobic004G199400--Sobic003G142400 Sobic004G070100 Sobic004G070100 Sobic004G199400--Sobic004G070100 Sobic010G088200 Sobic010G088200 Sobic004G199400--Sobic010G088200 Sobic001G478900 Sobic001G478900 Sobic004G199400--Sobic001G478900 Sobic001G292800 Sobic001G292800 Sobic004G199400--Sobic001G292800 Sobic004G199400--Sobic002G037900 Sobic004G199400--Sobic010G123100 Sobic010G066900 Sobic010G066900 Sobic004G199400--Sobic010G066900 Sobic001G491700--Sobic009G096566 Sobic004G349500 Sobic004G349500 Sobic001G491700--Sobic004G349500 Sobic004G351932 Sobic004G351932 Sobic001G491700--Sobic004G351932 Sobic001G491700--Sobic006G084701 Sobic001G491700--Sobic002G358900 Sobic002G105501 Sobic002G105501 Sobic001G491700--Sobic002G105501 Sobic001G005400 Sobic001G005400 Sobic001G491700--Sobic001G005400 Sobic007G220066 Sobic007G220066 Sobic001G491700--Sobic007G220066 Sobic004G051500 Sobic004G051500 Sobic001G491700--Sobic004G051500 Sobic009G205000--Sobic005G024600 Sobic001G477350 Sobic001G477350 Sobic009G205000--Sobic001G477350 Sobic004G078400 Sobic004G078400 Sobic009G205000--Sobic004G078400 Sobic007G172900 Sobic007G172900 Sobic009G205000--Sobic007G172900 Sobic006G123600 Sobic006G123600 Sobic009G205000--Sobic006G123600 Sobic010G103000 Sobic010G103000 Sobic009G205000--Sobic010G103000 Sobic009G205000--Sobic010G046200 Sobic009G205000--Sobic002G358900 Sobic009G066000 Sobic009G066000 Sobic009G205000--Sobic009G066000 Sobic005G024600--Sobic009G205000 Sobic003G303000 Sobic003G303000 Sobic005G024600--Sobic003G303000 Sobic008G072050 Sobic008G072050 Sobic005G024600--Sobic008G072050 Sobic005G024600--Sobic005G110550 Sobic007G202000 Sobic007G202000 Sobic005G024600--Sobic007G202000 Sobic004G041000 Sobic004G041000 Sobic005G024600--Sobic004G041000 Sobic005G024600--Sobic003G399900 Sobic010G202900 Sobic010G202900 Sobic005G024600--Sobic010G202900 Sobic005G024600--Sobic007G172900 Sobic001G436600 Sobic001G436600 Sobic006G085800--Sobic001G436600 Sobic006G085800--Sobic001G478900 Sobic004G256900 Sobic004G256900 Sobic006G085800--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic006G085800--Sobic002G172500 Sobic006G085900 Sobic006G085900 Sobic006G085800--Sobic006G085900 Sobic010G068900 Sobic010G068900 Sobic006G085800--Sobic010G068900 Sobic010G190900 Sobic010G190900 Sobic006G085800--Sobic010G190900 Sobic006G262800 Sobic006G262800 Sobic006G085800--Sobic006G262800 Sobic006G095000 Sobic006G095000 Sobic006G085800--Sobic006G095000 Sobic004G353300 Sobic004G353300 Sobic010G123100--Sobic004G353300 Sobic004G298600 Sobic004G298600 Sobic010G123100--Sobic004G298600 Sobic010G274800 Sobic010G274800 Sobic010G123100--Sobic010G274800 Sobic008G095900 Sobic008G095900 Sobic010G123100--Sobic008G095900 Sobic001G308500 Sobic001G308500 Sobic010G123100--Sobic001G308500 Sobic001G385300 Sobic001G385300 Sobic010G123100--Sobic001G385300 Sobic008G085950 Sobic008G085950 Sobic010G123100--Sobic008G085950 Sobic007G105700 Sobic007G105700 Sobic010G123100--Sobic007G105700 Sobic006G265800 Sobic006G265800 Sobic010G123100--Sobic006G265800 Sobic006G053500 Sobic006G053500 Sobic003G399900--Sobic006G053500 Sobic003G399900--Sobic010G202900 Sobic003G399900--Sobic005G110550 Sobic003G399900--Sobic002G279200 Sobic003G316400 Sobic003G316400 Sobic003G399900--Sobic003G316400 Sobic004G338400 Sobic004G338400 Sobic003G399900--Sobic004G338400 Sobic003G399900--Sobic005G008700 Sobic010G091366 Sobic010G091366 Sobic003G399900--Sobic010G091366 Sobic003G399900--Sobic008G072050
Octagon: transcription factors


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