Gene annotation
Transcriptome id Sobic.004G199400.1
Synonym Sb04g024590
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide repeat protein PPR986-12, putative, expressed
UniProt A0A194YQM8
Pfam PF14432 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF811
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16480 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os09g07780.1 : pentatricopeptide repeat protein PPR986-12, putative, expressed
MaizeGDB (Corn) Zm00025a031812
Brachypodium KQK00135
Barley HORVU6Hr1G052950.9 , HORVU6Hr1G052950.8 , HORVU6Hr1G052950.5 , HORVU6Hr1G052950.4 , HORVU6Hr1G052950.7 , HORVU6Hr1G052950.6 , HORVU6Hr1G052950.1 , HORVU6Hr1G052950.3 , HORVU6Hr1G052950.2 , HORVU6Hr1G052950.11 , HORVU6Hr1G052950.13 , HORVU6Hr1G052950.12 , HORVU6Hr1G052950.14 , HORVU6Hr1G052950.10
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.004G199400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G358900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
2 Sobic.003G142400 pentatricopeptide, putative, expressed -
3 Sobic.004G070100 exostosin family domain containing protein, expressed -
4 Sobic.010G088200 pentatricopeptide, putative, expressed -
5 Sobic.001G478900 pentatricopeptide, putative, expressed -
6 Sobic.001G292800 pentatricopeptide, putative, expressed -
7 Sobic.002G037900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.010G123100 transporter-related, putative, expressed -
9 Sobic.010G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
12 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
13 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.003G354500 methyltransferase, putative, expressed -
16 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.001G254300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized oxidoreductase, putative, expressed -
19 Sobic.008G171500 PPR repeat containing protein, expressed -
20 Sobic.009G013800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic004G199400 Sobic004G199400 Sobic002G358900 Sobic002G358900 Sobic004G199400--Sobic002G358900 Sobic003G142400 Sobic003G142400 Sobic004G199400--Sobic003G142400 Sobic004G070100 Sobic004G070100 Sobic004G199400--Sobic004G070100 Sobic010G088200 Sobic010G088200 Sobic004G199400--Sobic010G088200 Sobic001G478900 Sobic001G478900 Sobic004G199400--Sobic001G478900 Sobic001G292800 Sobic001G292800 Sobic004G199400--Sobic001G292800 Sobic002G037900 Sobic002G037900 Sobic004G199400--Sobic002G037900 Sobic010G123100 Sobic010G123100 Sobic004G199400--Sobic010G123100 Sobic010G066900 Sobic010G066900 Sobic004G199400--Sobic010G066900 Sobic005G110550 Sobic005G110550 Sobic002G358900--Sobic005G110550 Sobic002G358900--Sobic002G037900 Sobic002G358900--Sobic004G199400 Sobic001G491700 Sobic001G491700 Sobic002G358900--Sobic001G491700 Sobic009G205000 Sobic009G205000 Sobic002G358900--Sobic009G205000 Sobic005G024600 Sobic005G024600 Sobic002G358900--Sobic005G024600 Sobic006G085800 Sobic006G085800 Sobic002G358900--Sobic006G085800 Sobic002G358900--Sobic010G123100 Sobic003G399900 Sobic003G399900 Sobic002G358900--Sobic003G399900 Sobic001G268300 Sobic001G268300 Sobic003G142400--Sobic001G268300 Sobic006G262800 Sobic006G262800 Sobic003G142400--Sobic006G262800 Sobic010G068900 Sobic010G068900 Sobic003G142400--Sobic010G068900 Sobic003G142400--Sobic001G478900 Sobic003G184300 Sobic003G184300 Sobic003G142400--Sobic003G184300 Sobic008G163400 Sobic008G163400 Sobic003G142400--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic003G142400--Sobic004G241000 Sobic008G179000 Sobic008G179000 Sobic003G142400--Sobic008G179000 Sobic009G041800 Sobic009G041800 Sobic003G142400--Sobic009G041800 Sobic003G354500 Sobic003G354500 Sobic004G070100--Sobic003G354500 Sobic004G070100--Sobic010G123100 Sobic004G353300 Sobic004G353300 Sobic004G070100--Sobic004G353300 Sobic008G047500 Sobic008G047500 Sobic004G070100--Sobic008G047500 Sobic007G096800 Sobic007G096800 Sobic004G070100--Sobic007G096800 Sobic003G359400 Sobic003G359400 Sobic004G070100--Sobic003G359400 Sobic003G204100 Sobic003G204100 Sobic004G070100--Sobic003G204100 Sobic010G038200 Sobic010G038200 Sobic004G070100--Sobic010G038200 Sobic004G000400 Sobic004G000400 Sobic004G070100--Sobic004G000400 Sobic010G088200--Sobic001G478900 Sobic002G172500 Sobic002G172500 Sobic010G088200--Sobic002G172500 Sobic008G082800 Sobic008G082800 Sobic010G088200--Sobic008G082800 Sobic010G088200--Sobic004G199400 Sobic004G256900 Sobic004G256900 Sobic010G088200--Sobic004G256900 Sobic010G088200--Sobic003G142400 Sobic010G088200--Sobic010G066900 Sobic004G141600 Sobic004G141600 Sobic010G088200--Sobic004G141600 Sobic010G088200--Sobic003G184300 Sobic008G095900 Sobic008G095900 Sobic001G478900--Sobic008G095900 Sobic001G478900--Sobic006G262800 Sobic001G478900--Sobic004G256900 Sobic001G478900--Sobic003G184300 Sobic009G047700 Sobic009G047700 Sobic001G478900--Sobic009G047700 Sobic004G051600 Sobic004G051600 Sobic001G478900--Sobic004G051600 Sobic001G478900--Sobic010G068900 Sobic009G253101 Sobic009G253101 Sobic001G478900--Sobic009G253101 Sobic001G478900--Sobic010G123100 Sobic001G292800--Sobic006G085800 Sobic004G215600 Sobic004G215600 Sobic001G292800--Sobic004G215600 Sobic008G031200 Sobic008G031200 Sobic001G292800--Sobic008G031200 Sobic001G292800--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic001G292800--Sobic002G362200 Sobic001G292800--Sobic003G359400 Sobic003G392100 Sobic003G392100 Sobic001G292800--Sobic003G392100 Sobic001G292800--Sobic003G142400 Sobic006G095000 Sobic006G095000 Sobic001G292800--Sobic006G095000 Sobic002G037900--Sobic002G358900 Sobic003G089900 Sobic003G089900 Sobic002G037900--Sobic003G089900 Sobic002G037900--Sobic005G110550 Sobic010G046200 Sobic010G046200 Sobic002G037900--Sobic010G046200 Sobic005G151000 Sobic005G151000 Sobic002G037900--Sobic005G151000 Sobic006G084701 Sobic006G084701 Sobic002G037900--Sobic006G084701 Sobic002G037900--Sobic004G199400 Sobic009G096566 Sobic009G096566 Sobic002G037900--Sobic009G096566 Sobic002G095800 Sobic002G095800 Sobic002G037900--Sobic002G095800 Sobic010G123100--Sobic004G353300 Sobic004G298600 Sobic004G298600 Sobic010G123100--Sobic004G298600 Sobic010G274800 Sobic010G274800 Sobic010G123100--Sobic010G274800 Sobic010G123100--Sobic008G095900 Sobic001G308500 Sobic001G308500 Sobic010G123100--Sobic001G308500 Sobic001G385300 Sobic001G385300 Sobic010G123100--Sobic001G385300 Sobic008G085950 Sobic008G085950 Sobic010G123100--Sobic008G085950 Sobic007G105700 Sobic007G105700 Sobic010G123100--Sobic007G105700 Sobic006G265800 Sobic006G265800 Sobic010G123100--Sobic006G265800 Sobic001G149100 Sobic001G149100 Sobic010G066900--Sobic001G149100 Sobic004G176500 Sobic004G176500 Sobic010G066900--Sobic004G176500 Sobic009G238700 Sobic009G238700 Sobic010G066900--Sobic009G238700 Sobic010G066900--Sobic008G163400 Sobic010G066900--Sobic004G241000 Sobic003G299200 Sobic003G299200 Sobic010G066900--Sobic003G299200 Sobic003G239000 Sobic003G239000 Sobic010G066900--Sobic003G239000 Sobic001G347100 Sobic001G347100 Sobic010G066900--Sobic001G347100 Sobic007G123100 Sobic007G123100 Sobic010G066900--Sobic007G123100
Octagon: transcription factors


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