Gene annotation
Transcriptome id Sobic.009G013800.1
Synonym Sb09g001360
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt B3VTB1
Pfam PF01535
Panther DB PTHR24015 PTHR24015:SF823
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G28640 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g52475.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a040941
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G142400 pentatricopeptide, putative, expressed -
2 Sobic.001G297200 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
3 Sobic.001G362500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
4 Sobic.004G199400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat protein PPR986-12, putative, expressed -
5 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.008G009000 pentatricopeptide, putative, expressed -
7 Sobic.001G478900 pentatricopeptide, putative, expressed -
8 Sobic.004G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wound/stress protein, putative, expressed -
9 Sobic.002G358900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
10 Sobic.002G186200 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
11 Sobic.007G003600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@cytochrome P450, putative, expressed -
12 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
13 Sobic.002G154800 glycosyl transferase, group 1 domain containing protein, expressed -
14 Sobic.001G023600 YIF1B, putative, expressed -
15 Sobic.005G014800 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.004G035400 PFT1, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
17 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.003G202400 expressed protein -
19 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
20 Sobic.001G543400 phosphoglycerate mutase, putative, expressed -


Gene co-expression network
sample Sobic009G013800 Sobic009G013800 Sobic003G142400 Sobic003G142400 Sobic009G013800--Sobic003G142400 Sobic001G297200 Sobic001G297200 Sobic009G013800--Sobic001G297200 Sobic001G362500 Sobic001G362500 Sobic009G013800--Sobic001G362500 Sobic004G199400 Sobic004G199400 Sobic009G013800--Sobic004G199400 Sobic006G262800 Sobic006G262800 Sobic009G013800--Sobic006G262800 Sobic008G009000 Sobic008G009000 Sobic009G013800--Sobic008G009000 Sobic001G478900 Sobic001G478900 Sobic009G013800--Sobic001G478900 Sobic004G232700 Sobic004G232700 Sobic009G013800--Sobic004G232700 Sobic002G358900 Sobic002G358900 Sobic009G013800--Sobic002G358900 Sobic001G268300 Sobic001G268300 Sobic003G142400--Sobic001G268300 Sobic003G142400--Sobic006G262800 Sobic010G068900 Sobic010G068900 Sobic003G142400--Sobic010G068900 Sobic003G142400--Sobic001G478900 Sobic003G184300 Sobic003G184300 Sobic003G142400--Sobic003G184300 Sobic008G163400 Sobic008G163400 Sobic003G142400--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic003G142400--Sobic004G241000 Sobic008G179000 Sobic008G179000 Sobic003G142400--Sobic008G179000 Sobic009G041800 Sobic009G041800 Sobic003G142400--Sobic009G041800 Sobic009G027700 Sobic009G027700 Sobic001G297200--Sobic009G027700 Sobic010G242700 Sobic010G242700 Sobic001G297200--Sobic010G242700 Sobic008G040600 Sobic008G040600 Sobic001G297200--Sobic008G040600 Sobic001G230801 Sobic001G230801 Sobic001G297200--Sobic001G230801 Sobic009G157800 Sobic009G157800 Sobic001G297200--Sobic009G157800 Sobic008G122800 Sobic008G122800 Sobic001G297200--Sobic008G122800 Sobic004G180100 Sobic004G180100 Sobic001G297200--Sobic004G180100 Sobic001G342101 Sobic001G342101 Sobic001G297200--Sobic001G342101 Sobic001G505600 Sobic001G505600 Sobic001G297200--Sobic001G505600 Sobic001G189200 Sobic001G189200 Sobic001G362500--Sobic001G189200 Sobic004G094000 Sobic004G094000 Sobic001G362500--Sobic004G094000 Sobic010G045400 Sobic010G045400 Sobic001G362500--Sobic010G045400 Sobic008G037900 Sobic008G037900 Sobic001G362500--Sobic008G037900 Sobic009G084400 Sobic009G084400 Sobic001G362500--Sobic009G084400 Sobic010G063900 Sobic010G063900 Sobic001G362500--Sobic010G063900 Sobic003G269900 Sobic003G269900 Sobic001G362500--Sobic003G269900 Sobic007G020700 Sobic007G020700 Sobic001G362500--Sobic007G020700 Sobic001G365200 Sobic001G365200 Sobic001G362500--Sobic001G365200 Sobic004G199400--Sobic002G358900 Sobic004G199400--Sobic003G142400 Sobic004G070100 Sobic004G070100 Sobic004G199400--Sobic004G070100 Sobic010G088200 Sobic010G088200 Sobic004G199400--Sobic010G088200 Sobic004G199400--Sobic001G478900 Sobic001G292800 Sobic001G292800 Sobic004G199400--Sobic001G292800 Sobic002G037900 Sobic002G037900 Sobic004G199400--Sobic002G037900 Sobic010G123100 Sobic010G123100 Sobic004G199400--Sobic010G123100 Sobic010G066900 Sobic010G066900 Sobic004G199400--Sobic010G066900 Sobic006G262800--Sobic010G068900 Sobic009G154900 Sobic009G154900 Sobic006G262800--Sobic009G154900 Sobic006G262800--Sobic001G478900 Sobic004G256900 Sobic004G256900 Sobic006G262800--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic006G262800--Sobic002G172500 Sobic006G262800--Sobic008G163400 Sobic001G052100 Sobic001G052100 Sobic006G262800--Sobic001G052100 Sobic006G262800--Sobic001G268300 Sobic006G262800--Sobic004G241000 Sobic008G009000--Sobic008G179000 Sobic003G239000 Sobic003G239000 Sobic008G009000--Sobic003G239000 Sobic001G149100 Sobic001G149100 Sobic008G009000--Sobic001G149100 Sobic008G009000--Sobic008G163400 Sobic002G267600 Sobic002G267600 Sobic008G009000--Sobic002G267600 Sobic008G009000--Sobic004G241000 Sobic008G009000--Sobic004G256900 Sobic010G252700 Sobic010G252700 Sobic008G009000--Sobic010G252700 Sobic008G009000--Sobic003G142400 Sobic008G095900 Sobic008G095900 Sobic001G478900--Sobic008G095900 Sobic001G478900--Sobic006G262800 Sobic001G478900--Sobic004G256900 Sobic001G478900--Sobic003G184300 Sobic009G047700 Sobic009G047700 Sobic001G478900--Sobic009G047700 Sobic004G051600 Sobic004G051600 Sobic001G478900--Sobic004G051600 Sobic001G478900--Sobic010G068900 Sobic009G253101 Sobic009G253101 Sobic001G478900--Sobic009G253101 Sobic001G478900--Sobic010G123100 Sobic007G212100 Sobic007G212100 Sobic004G232700--Sobic007G212100 Sobic002G352200 Sobic002G352200 Sobic004G232700--Sobic002G352200 Sobic001G543400 Sobic001G543400 Sobic004G232700--Sobic001G543400 Sobic009G176400 Sobic009G176400 Sobic004G232700--Sobic009G176400 Sobic007G014700 Sobic007G014700 Sobic004G232700--Sobic007G014700 Sobic004G251600 Sobic004G251600 Sobic004G232700--Sobic004G251600 Sobic004G173700 Sobic004G173700 Sobic004G232700--Sobic004G173700 Sobic004G261800 Sobic004G261800 Sobic004G232700--Sobic004G261800 Sobic002G124900 Sobic002G124900 Sobic004G232700--Sobic002G124900 Sobic005G110550 Sobic005G110550 Sobic002G358900--Sobic005G110550 Sobic002G358900--Sobic002G037900 Sobic002G358900--Sobic004G199400 Sobic001G491700 Sobic001G491700 Sobic002G358900--Sobic001G491700 Sobic009G205000 Sobic009G205000 Sobic002G358900--Sobic009G205000 Sobic005G024600 Sobic005G024600 Sobic002G358900--Sobic005G024600 Sobic006G085800 Sobic006G085800 Sobic002G358900--Sobic006G085800 Sobic002G358900--Sobic010G123100 Sobic003G399900 Sobic003G399900 Sobic002G358900--Sobic003G399900
Octagon: transcription factors


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