Gene annotation
Transcriptome id Sobic.010G088200.1
Synonym Sb10g007640
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1W0VS13
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF660
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G20730 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g53630.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a042556
Brachypodium KQJ84764 , PNT61900
Barley HORVU2Hr1G107350.8 , HORVU2Hr1G107350.9 , HORVU2Hr1G107350.2 , HORVU2Hr1G107350.3 , HORVU2Hr1G107350.1 , HORVU2Hr1G107350.6 , HORVU2Hr1G107350.7 , HORVU2Hr1G107350.4 , HORVU2Hr1G107350.5 , HORVU2Hr1G107350.10 , HORVU2Hr1G107350.11 , HORVU2Hr1G107350.12 , HORVU2Hr1G107350.13
Wheat TraesCS2D02G476100 , TraesCS2A02G476200 , TraesCS2B02G499800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G478900 pentatricopeptide, putative, expressed -
2 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
3 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.004G199400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat protein PPR986-12, putative, expressed -
5 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
6 Sobic.003G142400 pentatricopeptide, putative, expressed -
7 Sobic.010G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.004G141600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@vegetative storage protein, putative, expressed -
9 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
11 Sobic.006G085900 pentatricopeptide, putative, expressed -
12 Sobic.006G262700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phytosulfokine receptor precursor, putative, expressed -
13 Sobic.009G063500 OsWAK75 - OsWAK receptor-like protein kinase, expressed -
14 Sobic.008G171500 PPR repeat containing protein, expressed -
15 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.006G054000 - -
19 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.004G346200 tetratricopeptide-like helical, putative, expressed -


Gene co-expression network
sample Sobic010G088200 Sobic010G088200 Sobic001G478900 Sobic001G478900 Sobic010G088200--Sobic001G478900 Sobic002G172500 Sobic002G172500 Sobic010G088200--Sobic002G172500 Sobic008G082800 Sobic008G082800 Sobic010G088200--Sobic008G082800 Sobic004G199400 Sobic004G199400 Sobic010G088200--Sobic004G199400 Sobic004G256900 Sobic004G256900 Sobic010G088200--Sobic004G256900 Sobic003G142400 Sobic003G142400 Sobic010G088200--Sobic003G142400 Sobic010G066900 Sobic010G066900 Sobic010G088200--Sobic010G066900 Sobic004G141600 Sobic004G141600 Sobic010G088200--Sobic004G141600 Sobic003G184300 Sobic003G184300 Sobic010G088200--Sobic003G184300 Sobic008G095900 Sobic008G095900 Sobic001G478900--Sobic008G095900 Sobic006G262800 Sobic006G262800 Sobic001G478900--Sobic006G262800 Sobic001G478900--Sobic004G256900 Sobic001G478900--Sobic003G184300 Sobic009G047700 Sobic009G047700 Sobic001G478900--Sobic009G047700 Sobic004G051600 Sobic004G051600 Sobic001G478900--Sobic004G051600 Sobic010G068900 Sobic010G068900 Sobic001G478900--Sobic010G068900 Sobic009G253101 Sobic009G253101 Sobic001G478900--Sobic009G253101 Sobic010G123100 Sobic010G123100 Sobic001G478900--Sobic010G123100 Sobic002G172500--Sobic010G068900 Sobic002G172500--Sobic008G082800 Sobic002G172500--Sobic004G256900 Sobic002G172500--Sobic006G262800 Sobic004G241000 Sobic004G241000 Sobic002G172500--Sobic004G241000 Sobic006G085900 Sobic006G085900 Sobic002G172500--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic002G172500--Sobic009G155400 Sobic002G172500--Sobic003G184300 Sobic008G163400 Sobic008G163400 Sobic002G172500--Sobic008G163400 Sobic008G082800--Sobic002G172500 Sobic008G082800--Sobic004G256900 Sobic008G082800--Sobic001G478900 Sobic008G082800--Sobic003G184300 Sobic008G082800--Sobic010G068900 Sobic008G082800--Sobic009G155400 Sobic008G082800--Sobic006G085900 Sobic009G063500 Sobic009G063500 Sobic008G082800--Sobic009G063500 Sobic008G082800--Sobic006G262800 Sobic002G358900 Sobic002G358900 Sobic004G199400--Sobic002G358900 Sobic004G199400--Sobic003G142400 Sobic004G070100 Sobic004G070100 Sobic004G199400--Sobic004G070100 Sobic004G199400--Sobic010G088200 Sobic004G199400--Sobic001G478900 Sobic001G292800 Sobic001G292800 Sobic004G199400--Sobic001G292800 Sobic002G037900 Sobic002G037900 Sobic004G199400--Sobic002G037900 Sobic004G199400--Sobic010G123100 Sobic004G199400--Sobic010G066900 Sobic004G256900--Sobic003G184300 Sobic004G256900--Sobic004G241000 Sobic004G256900--Sobic010G068900 Sobic004G256900--Sobic002G172500 Sobic006G069100 Sobic006G069100 Sobic004G256900--Sobic006G069100 Sobic004G256900--Sobic006G262800 Sobic010G190900 Sobic010G190900 Sobic004G256900--Sobic010G190900 Sobic004G256900--Sobic001G478900 Sobic004G256900--Sobic008G163400 Sobic001G268300 Sobic001G268300 Sobic003G142400--Sobic001G268300 Sobic003G142400--Sobic006G262800 Sobic003G142400--Sobic010G068900 Sobic003G142400--Sobic001G478900 Sobic003G142400--Sobic003G184300 Sobic003G142400--Sobic008G163400 Sobic003G142400--Sobic004G241000 Sobic008G179000 Sobic008G179000 Sobic003G142400--Sobic008G179000 Sobic009G041800 Sobic009G041800 Sobic003G142400--Sobic009G041800 Sobic001G149100 Sobic001G149100 Sobic010G066900--Sobic001G149100 Sobic004G176500 Sobic004G176500 Sobic010G066900--Sobic004G176500 Sobic009G238700 Sobic009G238700 Sobic010G066900--Sobic009G238700 Sobic010G066900--Sobic008G163400 Sobic010G066900--Sobic004G241000 Sobic003G299200 Sobic003G299200 Sobic010G066900--Sobic003G299200 Sobic003G239000 Sobic003G239000 Sobic010G066900--Sobic003G239000 Sobic001G347100 Sobic001G347100 Sobic010G066900--Sobic001G347100 Sobic007G123100 Sobic007G123100 Sobic010G066900--Sobic007G123100 Sobic004G141600--Sobic001G478900 Sobic002G108100 Sobic002G108100 Sobic004G141600--Sobic002G108100 Sobic008G155400 Sobic008G155400 Sobic004G141600--Sobic008G155400 Sobic002G106200 Sobic002G106200 Sobic004G141600--Sobic002G106200 Sobic005G171700 Sobic005G171700 Sobic004G141600--Sobic005G171700 Sobic003G342500 Sobic003G342500 Sobic004G141600--Sobic003G342500 Sobic004G141600--Sobic003G142400 Sobic007G048900 Sobic007G048900 Sobic004G141600--Sobic007G048900 Sobic007G106600 Sobic007G106600 Sobic004G141600--Sobic007G106600 Sobic003G184300--Sobic004G256900 Sobic006G095000 Sobic006G095000 Sobic003G184300--Sobic006G095000 Sobic002G192900 Sobic002G192900 Sobic003G184300--Sobic002G192900 Sobic001G361200 Sobic001G361200 Sobic003G184300--Sobic001G361200 Sobic003G184300--Sobic001G478900 Sobic003G184300--Sobic010G068900 Sobic003G184300--Sobic002G172500 Sobic010G188900 Sobic010G188900 Sobic003G184300--Sobic010G188900 Sobic004G064600 Sobic004G064600 Sobic003G184300--Sobic004G064600
Octagon: transcription factors


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