Gene annotation
Transcriptome id Sobic.001G069300.2
Synonym Sb01g006260
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1Z5S4L9
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF388
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G21300 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g56850.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a016654
Brachypodium KQK12902
Barley -
Wheat TraesCS5D02G424500 , TraesCS5D02G424500 , TraesCS5A02G416800 , TraesCS5A02G416800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G257600 PPR repeat containing protein, expressed -
2 Sobic.002G136300 calmodulin-binding heat-shock protein, putative, expressed -
3 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.002G358900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
5 Sobic.004G312000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
6 Sobic.004G046001 - -
7 Sobic.005G124850 - -
8 Sobic.002G037900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.004G346200 tetratricopeptide-like helical, putative, expressed -
10 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.003G047400 pentatricopeptide, putative, expressed -
12 Sobic.001G478900 pentatricopeptide, putative, expressed -
13 Sobic.007G082200 white-brown complex homolog protein 11, putative, expressed -
14 Sobic.004G255300 pentatricopeptide, putative, expressed -
15 Sobic.003G119100 tetratricopeptide-like helical, putative, expressed -
16 Sobic.005G110550 - -
17 Sobic.003G074300 expressed protein -
18 Sobic.004G199400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat protein PPR986-12, putative, expressed -
19 Sobic.004G250100 pentatricopeptide, putative, expressed -
20 Sobic.001G159500 tesmin/TSO1-like CXC domain containing protein, expressed -


Gene co-expression network
sample Sobic001G069300 Sobic001G069300 Sobic002G257600 Sobic002G257600 Sobic001G069300--Sobic002G257600 Sobic002G136300 Sobic002G136300 Sobic001G069300--Sobic002G136300 Sobic003G203100 Sobic003G203100 Sobic001G069300--Sobic003G203100 Sobic002G358900 Sobic002G358900 Sobic001G069300--Sobic002G358900 Sobic004G312000 Sobic004G312000 Sobic001G069300--Sobic004G312000 Sobic004G046001 Sobic004G046001 Sobic001G069300--Sobic004G046001 Sobic005G124850 Sobic005G124850 Sobic001G069300--Sobic005G124850 Sobic002G037900 Sobic002G037900 Sobic001G069300--Sobic002G037900 Sobic004G346200 Sobic004G346200 Sobic001G069300--Sobic004G346200 Sobic003G232500 Sobic003G232500 Sobic002G257600--Sobic003G232500 Sobic001G159500 Sobic001G159500 Sobic002G257600--Sobic001G159500 Sobic002G257600--Sobic004G312000 Sobic003G384750 Sobic003G384750 Sobic002G257600--Sobic003G384750 Sobic001G444200 Sobic001G444200 Sobic002G257600--Sobic001G444200 Sobic004G200100 Sobic004G200100 Sobic002G257600--Sobic004G200100 Sobic003G394000 Sobic003G394000 Sobic002G257600--Sobic003G394000 Sobic001G179500 Sobic001G179500 Sobic002G257600--Sobic001G179500 Sobic002G257600--Sobic001G069300 Sobic010G134600 Sobic010G134600 Sobic002G136300--Sobic010G134600 Sobic002G136300--Sobic001G069300 Sobic008G082800 Sobic008G082800 Sobic002G136300--Sobic008G082800 Sobic001G478900 Sobic001G478900 Sobic002G136300--Sobic001G478900 Sobic002G136300--Sobic002G358900 Sobic002G138300 Sobic002G138300 Sobic002G136300--Sobic002G138300 Sobic003G184300 Sobic003G184300 Sobic002G136300--Sobic003G184300 Sobic007G082200 Sobic007G082200 Sobic002G136300--Sobic007G082200 Sobic004G025700 Sobic004G025700 Sobic002G136300--Sobic004G025700 Sobic010G232700 Sobic010G232700 Sobic003G203100--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic003G203100--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic003G203100--Sobic006G085900 Sobic002G084400 Sobic002G084400 Sobic003G203100--Sobic002G084400 Sobic008G009300 Sobic008G009300 Sobic003G203100--Sobic008G009300 Sobic002G389200 Sobic002G389200 Sobic003G203100--Sobic002G389200 Sobic001G490700 Sobic001G490700 Sobic003G203100--Sobic001G490700 Sobic002G167400 Sobic002G167400 Sobic003G203100--Sobic002G167400 Sobic005G210700 Sobic005G210700 Sobic003G203100--Sobic005G210700 Sobic005G110550 Sobic005G110550 Sobic002G358900--Sobic005G110550 Sobic002G358900--Sobic002G037900 Sobic004G199400 Sobic004G199400 Sobic002G358900--Sobic004G199400 Sobic001G491700 Sobic001G491700 Sobic002G358900--Sobic001G491700 Sobic009G205000 Sobic009G205000 Sobic002G358900--Sobic009G205000 Sobic005G024600 Sobic005G024600 Sobic002G358900--Sobic005G024600 Sobic006G085800 Sobic006G085800 Sobic002G358900--Sobic006G085800 Sobic010G123100 Sobic010G123100 Sobic002G358900--Sobic010G123100 Sobic003G399900 Sobic003G399900 Sobic002G358900--Sobic003G399900 Sobic003G047400 Sobic003G047400 Sobic004G312000--Sobic003G047400 Sobic004G312000--Sobic001G444200 Sobic007G107800 Sobic007G107800 Sobic004G312000--Sobic007G107800 Sobic004G312000--Sobic001G159500 Sobic005G100500 Sobic005G100500 Sobic004G312000--Sobic005G100500 Sobic001G332933 Sobic001G332933 Sobic004G312000--Sobic001G332933 Sobic004G312000--Sobic002G257600 Sobic004G145550 Sobic004G145550 Sobic004G312000--Sobic004G145550 Sobic010G148100 Sobic010G148100 Sobic004G312000--Sobic010G148100 Sobic008G140000 Sobic008G140000 Sobic004G046001--Sobic008G140000 Sobic004G250100 Sobic004G250100 Sobic004G046001--Sobic004G250100 Sobic008G142766 Sobic008G142766 Sobic004G046001--Sobic008G142766 Sobic001G527600 Sobic001G527600 Sobic004G046001--Sobic001G527600 Sobic006G055100 Sobic006G055100 Sobic004G046001--Sobic006G055100 Sobic003G091850 Sobic003G091850 Sobic004G046001--Sobic003G091850 Sobic008G110900 Sobic008G110900 Sobic004G046001--Sobic008G110900 Sobic008G178300 Sobic008G178300 Sobic004G046001--Sobic008G178300 Sobic002G074300 Sobic002G074300 Sobic004G046001--Sobic002G074300 Sobic005G124850--Sobic007G082200 Sobic008G100300 Sobic008G100300 Sobic005G124850--Sobic008G100300 Sobic006G239700 Sobic006G239700 Sobic005G124850--Sobic006G239700 Sobic003G156766 Sobic003G156766 Sobic005G124850--Sobic003G156766 Sobic005G124850--Sobic004G346200 Sobic001G065200 Sobic001G065200 Sobic005G124850--Sobic001G065200 Sobic009G047700 Sobic009G047700 Sobic005G124850--Sobic009G047700 Sobic004G189000 Sobic004G189000 Sobic005G124850--Sobic004G189000 Sobic005G124850--Sobic001G478900 Sobic002G037900--Sobic002G358900 Sobic003G089900 Sobic003G089900 Sobic002G037900--Sobic003G089900 Sobic002G037900--Sobic005G110550 Sobic010G046200 Sobic010G046200 Sobic002G037900--Sobic010G046200 Sobic005G151000 Sobic005G151000 Sobic002G037900--Sobic005G151000 Sobic006G084701 Sobic006G084701 Sobic002G037900--Sobic006G084701 Sobic002G037900--Sobic004G199400 Sobic009G096566 Sobic009G096566 Sobic002G037900--Sobic009G096566 Sobic002G095800 Sobic002G095800 Sobic002G037900--Sobic002G095800 Sobic009G116400 Sobic009G116400 Sobic004G346200--Sobic009G116400 Sobic004G346200--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic004G346200--Sobic009G155400 Sobic007G087900 Sobic007G087900 Sobic004G346200--Sobic007G087900 Sobic004G346200--Sobic008G082800 Sobic010G190900 Sobic010G190900 Sobic004G346200--Sobic010G190900 Sobic004G346200--Sobic005G210700 Sobic006G033380 Sobic006G033380 Sobic004G346200--Sobic006G033380 Sobic006G262700 Sobic006G262700 Sobic004G346200--Sobic006G262700
Octagon: transcription factors


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