Gene annotation
Transcriptome id Sobic.004G255300.1
Synonym Sb04g029423
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A194YRJ5
Pfam PF14432 PF12854 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF376
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G16835 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os08g05750.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a021873
Brachypodium PNT66791
Barley HORVU7Hr1G071780.8 , HORVU7Hr1G071780.9 , HORVU7Hr1G071780.5 , HORVU7Hr1G071780.2 , HORVU7Hr1G071780.4 , HORVU7Hr1G071780.1 , HORVU7Hr1G071780.10 , HORVU7Hr1G071780.6 , HORVU7Hr1G071780.7 , HORVU7Hr1G071780.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G111700 tetratricopeptide-like helical, putative, expressed -
2 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.001G412200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.001G527600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@radical SAM enzyme, putative, expressed K02495: hemN, oxygen-independent coproporphyrinogen III oxidase
5 Sobic.002G407800 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
6 Sobic.001G212200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LOI1, putative, expressed -
7 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.003G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1,4-alpha-glucan-branching enzyme, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
9 Sobic.004G250100 pentatricopeptide, putative, expressed -
10 Sobic.004G176500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.003G262650 - -
12 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
13 Sobic.010G067000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.008G009300 pentatricopeptide, putative, expressed -
15 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
16 Sobic.004G128666 - -
17 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
18 Sobic.007G042200 Leucine Rich Repeat family protein, expressed -
19 Sobic.010G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.007G179600 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic004G255300 Sobic004G255300 Sobic002G111700 Sobic002G111700 Sobic004G255300--Sobic002G111700 Sobic003G203100 Sobic003G203100 Sobic004G255300--Sobic003G203100 Sobic001G412200 Sobic001G412200 Sobic004G255300--Sobic001G412200 Sobic001G527600 Sobic001G527600 Sobic004G255300--Sobic001G527600 Sobic002G407800 Sobic002G407800 Sobic004G255300--Sobic002G407800 Sobic001G212200 Sobic001G212200 Sobic004G255300--Sobic001G212200 Sobic010G232700 Sobic010G232700 Sobic004G255300--Sobic010G232700 Sobic003G213800 Sobic003G213800 Sobic004G255300--Sobic003G213800 Sobic004G250100 Sobic004G250100 Sobic004G255300--Sobic004G250100 Sobic002G084400 Sobic002G084400 Sobic002G111700--Sobic002G084400 Sobic002G111700--Sobic004G255300 Sobic002G111700--Sobic010G232700 Sobic002G111700--Sobic003G203100 Sobic010G067000 Sobic010G067000 Sobic002G111700--Sobic010G067000 Sobic001G040600 Sobic001G040600 Sobic002G111700--Sobic001G040600 Sobic009G238700 Sobic009G238700 Sobic002G111700--Sobic009G238700 Sobic008G041000 Sobic008G041000 Sobic002G111700--Sobic008G041000 Sobic007G060600 Sobic007G060600 Sobic002G111700--Sobic007G060600 Sobic003G203100--Sobic010G232700 Sobic003G203100--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic003G203100--Sobic006G085900 Sobic003G203100--Sobic002G084400 Sobic008G009300 Sobic008G009300 Sobic003G203100--Sobic008G009300 Sobic002G389200 Sobic002G389200 Sobic003G203100--Sobic002G389200 Sobic001G490700 Sobic001G490700 Sobic003G203100--Sobic001G490700 Sobic002G167400 Sobic002G167400 Sobic003G203100--Sobic002G167400 Sobic005G210700 Sobic005G210700 Sobic003G203100--Sobic005G210700 Sobic003G051500 Sobic003G051500 Sobic001G412200--Sobic003G051500 Sobic007G179600 Sobic007G179600 Sobic001G412200--Sobic007G179600 Sobic001G081300 Sobic001G081300 Sobic001G412200--Sobic001G081300 Sobic003G419800 Sobic003G419800 Sobic001G412200--Sobic003G419800 Sobic009G136200 Sobic009G136200 Sobic001G412200--Sobic009G136200 Sobic004G128666 Sobic004G128666 Sobic001G412200--Sobic004G128666 Sobic001G001200 Sobic001G001200 Sobic001G412200--Sobic001G001200 Sobic001G412200--Sobic010G232700 Sobic003G262650 Sobic003G262650 Sobic001G412200--Sobic003G262650 Sobic001G527600--Sobic003G213800 Sobic001G527600--Sobic004G250100 Sobic001G527600--Sobic003G203100 Sobic001G527600--Sobic004G255300 Sobic004G312000 Sobic004G312000 Sobic001G527600--Sobic004G312000 Sobic003G433600 Sobic003G433600 Sobic001G527600--Sobic003G433600 Sobic001G527600--Sobic009G136200 Sobic001G527600--Sobic002G407800 Sobic004G046001 Sobic004G046001 Sobic001G527600--Sobic004G046001 Sobic010G099300 Sobic010G099300 Sobic002G407800--Sobic010G099300 Sobic002G407800--Sobic001G040600 Sobic001G254400 Sobic001G254400 Sobic002G407800--Sobic001G254400 Sobic002G407800--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic002G407800--Sobic001G395300 Sobic002G407800--Sobic001G081300 Sobic002G407800--Sobic002G389200 Sobic007G182600 Sobic007G182600 Sobic002G407800--Sobic007G182600 Sobic008G056900 Sobic008G056900 Sobic002G407800--Sobic008G056900 Sobic002G251800 Sobic002G251800 Sobic001G212200--Sobic002G251800 Sobic006G069100 Sobic006G069100 Sobic001G212200--Sobic006G069100 Sobic001G212200--Sobic001G040600 Sobic001G149100 Sobic001G149100 Sobic001G212200--Sobic001G149100 Sobic001G212200--Sobic002G167400 Sobic001G212200--Sobic010G099300 Sobic003G322200 Sobic003G322200 Sobic001G212200--Sobic003G322200 Sobic001G212200--Sobic009G238700 Sobic001G347100 Sobic001G347100 Sobic001G212200--Sobic001G347100 Sobic010G232700--Sobic002G084400 Sobic010G232700--Sobic008G041000 Sobic010G232700--Sobic006G085900 Sobic008G171500 Sobic008G171500 Sobic010G232700--Sobic008G171500 Sobic010G232700--Sobic003G203100 Sobic004G241000 Sobic004G241000 Sobic010G232700--Sobic004G241000 Sobic010G232700--Sobic006G069100 Sobic005G028300 Sobic005G028300 Sobic010G232700--Sobic005G028300 Sobic004G256900 Sobic004G256900 Sobic010G232700--Sobic004G256900 Sobic003G345300 Sobic003G345300 Sobic003G213800--Sobic003G345300 Sobic003G213800--Sobic004G250100 Sobic003G213800--Sobic001G527600 Sobic001G284200 Sobic001G284200 Sobic003G213800--Sobic001G284200 Sobic001G437801 Sobic001G437801 Sobic003G213800--Sobic001G437801 Sobic001G228300 Sobic001G228300 Sobic003G213800--Sobic001G228300 Sobic008G153200 Sobic008G153200 Sobic003G213800--Sobic008G153200 Sobic003G214800 Sobic003G214800 Sobic003G213800--Sobic003G214800 Sobic005G142900 Sobic005G142900 Sobic003G213800--Sobic005G142900 Sobic007G179500 Sobic007G179500 Sobic004G250100--Sobic007G179500 Sobic004G250100--Sobic003G433600 Sobic001G200600 Sobic001G200600 Sobic004G250100--Sobic001G200600 Sobic004G250100--Sobic003G213800 Sobic010G143400 Sobic010G143400 Sobic004G250100--Sobic010G143400 Sobic004G250100--Sobic001G490700 Sobic008G178300 Sobic008G178300 Sobic004G250100--Sobic008G178300 Sobic002G385200 Sobic002G385200 Sobic004G250100--Sobic002G385200 Sobic004G250100--Sobic001G527600
Octagon: transcription factors


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