Gene annotation
Transcriptome id Sobic.010G067000.1
Synonym Sb10g005810
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A194YHP3
Pfam PF14432 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF120
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G30700 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os06g08660.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a049747
Brachypodium KQK19250
Barley HORVU7Hr1G030840.6 , HORVU7Hr1G030840.4 , HORVU7Hr1G030840.5 , HORVU7Hr1G030840.2 , HORVU7Hr1G030840.3 , HORVU7Hr1G030840.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G200600 PPR repeat domain containing protein, putative, expressed -
2 Sobic.003G433600 pentatricopeptide, putative, expressed -
3 Sobic.008G009300 pentatricopeptide, putative, expressed -
4 Sobic.007G179500 - -
5 Sobic.004G250100 pentatricopeptide, putative, expressed -
6 Sobic.009G042500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.002G111700 tetratricopeptide-like helical, putative, expressed -
8 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.009G226000 vegetative storage protein, putative, expressed -
10 Sobic.001G490700 pentatricopeptide, putative, expressed -
11 Sobic.007G013200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.001G226200 expressed protein -
13 Sobic.001G105300 GA15368-PA, putative, expressed -
14 Sobic.004G176500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.010G202900 expressed protein -
16 Sobic.010G250500 DEFL21 - Defensin and Defensin-like DEFL family, expressed -
17 Sobic.004G255300 pentatricopeptide, putative, expressed -
18 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
19 Sobic.001G412200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.005G123900 ATP binding protein, putative, expressed K17592: sacsin


Gene co-expression network
sample Sobic010G067000 Sobic010G067000 Sobic001G200600 Sobic001G200600 Sobic010G067000--Sobic001G200600 Sobic003G433600 Sobic003G433600 Sobic010G067000--Sobic003G433600 Sobic008G009300 Sobic008G009300 Sobic010G067000--Sobic008G009300 Sobic007G179500 Sobic007G179500 Sobic010G067000--Sobic007G179500 Sobic004G250100 Sobic004G250100 Sobic010G067000--Sobic004G250100 Sobic009G042500 Sobic009G042500 Sobic010G067000--Sobic009G042500 Sobic002G111700 Sobic002G111700 Sobic010G067000--Sobic002G111700 Sobic003G203100 Sobic003G203100 Sobic010G067000--Sobic003G203100 Sobic009G226000 Sobic009G226000 Sobic010G067000--Sobic009G226000 Sobic001G200600--Sobic004G250100 Sobic001G200600--Sobic009G042500 Sobic001G200600--Sobic003G433600 Sobic001G200600--Sobic007G179500 Sobic010G092801 Sobic010G092801 Sobic001G200600--Sobic010G092801 Sobic001G200600--Sobic003G203100 Sobic001G490700 Sobic001G490700 Sobic001G200600--Sobic001G490700 Sobic001G200600--Sobic010G067000 Sobic008G041000 Sobic008G041000 Sobic001G200600--Sobic008G041000 Sobic003G433600--Sobic004G250100 Sobic003G202700 Sobic003G202700 Sobic003G433600--Sobic003G202700 Sobic003G433600--Sobic001G200600 Sobic007G013200 Sobic007G013200 Sobic003G433600--Sobic007G013200 Sobic003G433600--Sobic001G490700 Sobic003G032301 Sobic003G032301 Sobic003G433600--Sobic003G032301 Sobic001G491500 Sobic001G491500 Sobic003G433600--Sobic001G491500 Sobic008G178300 Sobic008G178300 Sobic003G433600--Sobic008G178300 Sobic006G222901 Sobic006G222901 Sobic003G433600--Sobic006G222901 Sobic008G009300--Sobic003G203100 Sobic002G389200 Sobic002G389200 Sobic008G009300--Sobic002G389200 Sobic010G232700 Sobic010G232700 Sobic008G009300--Sobic010G232700 Sobic008G009300--Sobic010G067000 Sobic007G179600 Sobic007G179600 Sobic008G009300--Sobic007G179600 Sobic008G149200 Sobic008G149200 Sobic008G009300--Sobic008G149200 Sobic010G161900 Sobic010G161900 Sobic008G009300--Sobic010G161900 Sobic002G084400 Sobic002G084400 Sobic008G009300--Sobic002G084400 Sobic003G299200 Sobic003G299200 Sobic008G009300--Sobic003G299200 Sobic007G179500--Sobic004G250100 Sobic007G179500--Sobic001G200600 Sobic007G179500--Sobic001G490700 Sobic002G385200 Sobic002G385200 Sobic007G179500--Sobic002G385200 Sobic007G179500--Sobic008G178300 Sobic008G013900 Sobic008G013900 Sobic007G179500--Sobic008G013900 Sobic006G271900 Sobic006G271900 Sobic007G179500--Sobic006G271900 Sobic003G219000 Sobic003G219000 Sobic007G179500--Sobic003G219000 Sobic001G182300 Sobic001G182300 Sobic007G179500--Sobic001G182300 Sobic004G250100--Sobic007G179500 Sobic004G250100--Sobic003G433600 Sobic004G250100--Sobic001G200600 Sobic003G213800 Sobic003G213800 Sobic004G250100--Sobic003G213800 Sobic010G143400 Sobic010G143400 Sobic004G250100--Sobic010G143400 Sobic004G250100--Sobic001G490700 Sobic004G250100--Sobic008G178300 Sobic004G250100--Sobic002G385200 Sobic001G527600 Sobic001G527600 Sobic004G250100--Sobic001G527600 Sobic009G042500--Sobic003G202700 Sobic009G042500--Sobic001G200600 Sobic009G042500--Sobic003G433600 Sobic006G266000 Sobic006G266000 Sobic009G042500--Sobic006G266000 Sobic001G226200 Sobic001G226200 Sobic009G042500--Sobic001G226200 Sobic009G042500--Sobic010G067000 Sobic009G042500--Sobic004G250100 Sobic010G066900 Sobic010G066900 Sobic009G042500--Sobic010G066900 Sobic002G292400 Sobic002G292400 Sobic009G042500--Sobic002G292400 Sobic002G111700--Sobic002G084400 Sobic004G255300 Sobic004G255300 Sobic002G111700--Sobic004G255300 Sobic002G111700--Sobic010G232700 Sobic002G111700--Sobic003G203100 Sobic002G111700--Sobic010G067000 Sobic001G040600 Sobic001G040600 Sobic002G111700--Sobic001G040600 Sobic009G238700 Sobic009G238700 Sobic002G111700--Sobic009G238700 Sobic002G111700--Sobic008G041000 Sobic007G060600 Sobic007G060600 Sobic002G111700--Sobic007G060600 Sobic003G203100--Sobic010G232700 Sobic003G203100--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic003G203100--Sobic006G085900 Sobic003G203100--Sobic002G084400 Sobic003G203100--Sobic008G009300 Sobic003G203100--Sobic002G389200 Sobic003G203100--Sobic001G490700 Sobic002G167400 Sobic002G167400 Sobic003G203100--Sobic002G167400 Sobic005G210700 Sobic005G210700 Sobic003G203100--Sobic005G210700 Sobic009G253200 Sobic009G253200 Sobic009G226000--Sobic009G253200 Sobic008G123200 Sobic008G123200 Sobic009G226000--Sobic008G123200 Sobic001G194700 Sobic001G194700 Sobic009G226000--Sobic001G194700 Sobic007G038700 Sobic007G038700 Sobic009G226000--Sobic007G038700 Sobic009G226000--Sobic006G271900 Sobic009G226000--Sobic010G067000 Sobic002G251800 Sobic002G251800 Sobic009G226000--Sobic002G251800 Sobic003G336500 Sobic003G336500 Sobic009G226000--Sobic003G336500 Sobic009G226000--Sobic001G040600
Octagon: transcription factors


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