Gene annotation
Transcriptome id Sobic.004G176500.1
Synonym Sb04g022670
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5XUS3
Pfam PF12854 PF13812 PF01535
Panther DB PTHR24015 PTHR24015:SF749
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G13600 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os02g34960.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a020654
Brachypodium KQJ92219
Barley HORVU5Hr1G042320.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.009G238700 EMB2744, putative, expressed -
3 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
4 Sobic.007G179600 pentatricopeptide, putative, expressed -
5 Sobic.004G128666 - -
6 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
7 Sobic.008G075100 hhH-GPD superfamily base excision DNA repair protein, putative, expressed K03575: A/G-specific adenine glycosylase
8 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
9 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.006G085900 pentatricopeptide, putative, expressed -
11 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
13 Sobic.002G267600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.003G299200 pentatricopeptide, putative, expressed -
15 Sobic.006G054000 - -
16 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G149100 vegetative storage protein, putative, expressed -
18 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
19 Sobic.001G412200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.006G069100 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic004G176500 Sobic004G176500 Sobic010G066900 Sobic010G066900 Sobic004G176500--Sobic010G066900 Sobic009G238700 Sobic009G238700 Sobic004G176500--Sobic009G238700 Sobic001G347100 Sobic001G347100 Sobic004G176500--Sobic001G347100 Sobic007G179600 Sobic007G179600 Sobic004G176500--Sobic007G179600 Sobic004G128666 Sobic004G128666 Sobic004G176500--Sobic004G128666 Sobic005G210700 Sobic005G210700 Sobic004G176500--Sobic005G210700 Sobic008G075100 Sobic008G075100 Sobic004G176500--Sobic008G075100 Sobic002G172500 Sobic002G172500 Sobic004G176500--Sobic002G172500 Sobic004G241000 Sobic004G241000 Sobic004G176500--Sobic004G241000 Sobic001G149100 Sobic001G149100 Sobic010G066900--Sobic001G149100 Sobic010G066900--Sobic004G176500 Sobic010G066900--Sobic009G238700 Sobic008G163400 Sobic008G163400 Sobic010G066900--Sobic008G163400 Sobic010G066900--Sobic004G241000 Sobic003G299200 Sobic003G299200 Sobic010G066900--Sobic003G299200 Sobic003G239000 Sobic003G239000 Sobic010G066900--Sobic003G239000 Sobic010G066900--Sobic001G347100 Sobic007G123100 Sobic007G123100 Sobic010G066900--Sobic007G123100 Sobic007G060600 Sobic007G060600 Sobic009G238700--Sobic007G060600 Sobic001G081300 Sobic001G081300 Sobic009G238700--Sobic001G081300 Sobic009G238700--Sobic001G347100 Sobic001G040600 Sobic001G040600 Sobic009G238700--Sobic001G040600 Sobic001G049800 Sobic001G049800 Sobic009G238700--Sobic001G049800 Sobic009G238700--Sobic007G179600 Sobic006G271900 Sobic006G271900 Sobic009G238700--Sobic006G271900 Sobic009G238700--Sobic003G299200 Sobic003G352100 Sobic003G352100 Sobic009G238700--Sobic003G352100 Sobic001G347100--Sobic001G149100 Sobic001G391101 Sobic001G391101 Sobic001G347100--Sobic001G391101 Sobic001G347100--Sobic001G081300 Sobic001G347100--Sobic009G238700 Sobic001G347100--Sobic007G179600 Sobic001G347100--Sobic003G299200 Sobic001G347100--Sobic004G241000 Sobic006G069100 Sobic006G069100 Sobic001G347100--Sobic006G069100 Sobic009G155400 Sobic009G155400 Sobic001G347100--Sobic009G155400 Sobic007G179600--Sobic001G081300 Sobic007G179600--Sobic001G347100 Sobic003G419800 Sobic003G419800 Sobic007G179600--Sobic003G419800 Sobic007G179600--Sobic001G391101 Sobic007G179600--Sobic005G210700 Sobic007G179600--Sobic009G238700 Sobic008G066900 Sobic008G066900 Sobic007G179600--Sobic008G066900 Sobic008G099900 Sobic008G099900 Sobic007G179600--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic007G179600--Sobic007G210801 Sobic001G412200 Sobic001G412200 Sobic004G128666--Sobic001G412200 Sobic004G128666--Sobic004G176500 Sobic008G031200 Sobic008G031200 Sobic004G128666--Sobic008G031200 Sobic002G084400 Sobic002G084400 Sobic004G128666--Sobic002G084400 Sobic004G128666--Sobic009G238700 Sobic002G162000 Sobic002G162000 Sobic004G128666--Sobic002G162000 Sobic010G232700 Sobic010G232700 Sobic004G128666--Sobic010G232700 Sobic006G085900 Sobic006G085900 Sobic004G128666--Sobic006G085900 Sobic003G051500 Sobic003G051500 Sobic004G128666--Sobic003G051500 Sobic005G210700--Sobic008G099900 Sobic005G210700--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic005G210700--Sobic009G116400 Sobic005G210700--Sobic006G085900 Sobic005G210700--Sobic007G179600 Sobic005G210700--Sobic001G347100 Sobic005G210700--Sobic008G066900 Sobic005G210700--Sobic006G069100 Sobic005G011000 Sobic005G011000 Sobic005G210700--Sobic005G011000 Sobic003G444300 Sobic003G444300 Sobic008G075100--Sobic003G444300 Sobic008G113300 Sobic008G113300 Sobic008G075100--Sobic008G113300 Sobic009G087300 Sobic009G087300 Sobic008G075100--Sobic009G087300 Sobic007G006800 Sobic007G006800 Sobic008G075100--Sobic007G006800 Sobic009G192700 Sobic009G192700 Sobic008G075100--Sobic009G192700 Sobic001G083300 Sobic001G083300 Sobic008G075100--Sobic001G083300 Sobic003G153900 Sobic003G153900 Sobic008G075100--Sobic003G153900 Sobic001G105800 Sobic001G105800 Sobic008G075100--Sobic001G105800 Sobic009G184200 Sobic009G184200 Sobic008G075100--Sobic009G184200 Sobic010G068900 Sobic010G068900 Sobic002G172500--Sobic010G068900 Sobic008G082800 Sobic008G082800 Sobic002G172500--Sobic008G082800 Sobic004G256900 Sobic004G256900 Sobic002G172500--Sobic004G256900 Sobic006G262800 Sobic006G262800 Sobic002G172500--Sobic006G262800 Sobic002G172500--Sobic004G241000 Sobic002G172500--Sobic006G085900 Sobic002G172500--Sobic009G155400 Sobic003G184300 Sobic003G184300 Sobic002G172500--Sobic003G184300 Sobic002G172500--Sobic008G163400 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic010G190900 Sobic010G190900 Sobic004G241000--Sobic010G190900 Sobic004G241000--Sobic010G068900 Sobic004G241000--Sobic003G239000 Sobic004G241000--Sobic006G085900 Sobic004G241000--Sobic002G172500 Sobic004G241000--Sobic009G155400
Octagon: transcription factors


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