Gene annotation
Transcriptome id Sobic.009G226000.1
Synonym ECB2, ATECB2, VAC1
Functional annotation vegetative storage protein, putative, expressed
UniProt A0A1B6P9S1
Pfam -
Panther DB PTHR24015 PTHR24015:SF549
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63370 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os05g06150.1 : vegetative storage protein, putative, expressed
MaizeGDB (Corn) Zm00025a004491
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G253200 RNA polymerase sigma factor, putative, expressed -
2 Sobic.008G123200 AAA-type ATPase family protein, putative, expressed -
3 Sobic.001G194700 - -
4 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
5 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
6 Sobic.010G067000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
8 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
9 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
10 Sobic.004G197000 glycine-rich cell wall structural protein precursor, putative, expressed -
11 Sobic.005G138000 zinc knuckle domain containing protein, expressed -
12 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
13 Sobic.004G192500 protein kinase PKN/PRK1, effector, putative, expressed -
14 Sobic.001G440300 pentatricopeptide, putative, expressed -
15 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
16 Sobic.004G265300 nucleolar complex protein 2, putative, expressed -
17 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
18 Sobic.001G517200 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
19 Sobic.001G179560 - -
20 Sobic.003G325900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat, putative, expressed -


Gene co-expression network
sample Sobic009G226000 Sobic009G226000 Sobic009G253200 Sobic009G253200 Sobic009G226000--Sobic009G253200 Sobic008G123200 Sobic008G123200 Sobic009G226000--Sobic008G123200 Sobic001G194700 Sobic001G194700 Sobic009G226000--Sobic001G194700 Sobic007G038700 Sobic007G038700 Sobic009G226000--Sobic007G038700 Sobic006G271900 Sobic006G271900 Sobic009G226000--Sobic006G271900 Sobic010G067000 Sobic010G067000 Sobic009G226000--Sobic010G067000 Sobic002G251800 Sobic002G251800 Sobic009G226000--Sobic002G251800 Sobic003G336500 Sobic003G336500 Sobic009G226000--Sobic003G336500 Sobic001G040600 Sobic001G040600 Sobic009G226000--Sobic001G040600 Sobic009G253200--Sobic006G271900 Sobic008G099900 Sobic008G099900 Sobic009G253200--Sobic008G099900 Sobic009G253200--Sobic002G251800 Sobic009G253200--Sobic007G038700 Sobic005G148400 Sobic005G148400 Sobic009G253200--Sobic005G148400 Sobic001G001200 Sobic001G001200 Sobic009G253200--Sobic001G001200 Sobic006G099501 Sobic006G099501 Sobic009G253200--Sobic006G099501 Sobic005G210700 Sobic005G210700 Sobic009G253200--Sobic005G210700 Sobic005G028300 Sobic005G028300 Sobic009G253200--Sobic005G028300 Sobic005G138000 Sobic005G138000 Sobic008G123200--Sobic005G138000 Sobic009G224300 Sobic009G224300 Sobic008G123200--Sobic009G224300 Sobic008G123200--Sobic003G336500 Sobic001G448000 Sobic001G448000 Sobic008G123200--Sobic001G448000 Sobic010G175000 Sobic010G175000 Sobic008G123200--Sobic010G175000 Sobic008G123200--Sobic007G038700 Sobic004G123200 Sobic004G123200 Sobic008G123200--Sobic004G123200 Sobic009G105400 Sobic009G105400 Sobic008G123200--Sobic009G105400 Sobic008G165266 Sobic008G165266 Sobic008G123200--Sobic008G165266 Sobic001G194700--Sobic007G038700 Sobic001G194700--Sobic008G123200 Sobic001G194700--Sobic002G251800 Sobic001G194700--Sobic001G448000 Sobic003G325900 Sobic003G325900 Sobic001G194700--Sobic003G325900 Sobic001G194700--Sobic003G336500 Sobic010G106100 Sobic010G106100 Sobic001G194700--Sobic010G106100 Sobic009G200000 Sobic009G200000 Sobic001G194700--Sobic009G200000 Sobic001G194700--Sobic010G175000 Sobic007G038700--Sobic002G251800 Sobic010G277200 Sobic010G277200 Sobic007G038700--Sobic010G277200 Sobic007G038700--Sobic008G123200 Sobic007G038700--Sobic003G336500 Sobic007G038700--Sobic009G105400 Sobic005G078700 Sobic005G078700 Sobic007G038700--Sobic005G078700 Sobic007G038700--Sobic001G194700 Sobic003G153900 Sobic003G153900 Sobic007G038700--Sobic003G153900 Sobic008G031200 Sobic008G031200 Sobic007G038700--Sobic008G031200 Sobic006G271900--Sobic001G040600 Sobic007G060600 Sobic007G060600 Sobic006G271900--Sobic007G060600 Sobic006G271900--Sobic009G253200 Sobic001G049800 Sobic001G049800 Sobic006G271900--Sobic001G049800 Sobic006G111200 Sobic006G111200 Sobic006G271900--Sobic006G111200 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic006G271900--Sobic005G028300 Sobic001G081300 Sobic001G081300 Sobic006G271900--Sobic001G081300 Sobic001G200600 Sobic001G200600 Sobic010G067000--Sobic001G200600 Sobic003G433600 Sobic003G433600 Sobic010G067000--Sobic003G433600 Sobic008G009300 Sobic008G009300 Sobic010G067000--Sobic008G009300 Sobic007G179500 Sobic007G179500 Sobic010G067000--Sobic007G179500 Sobic004G250100 Sobic004G250100 Sobic010G067000--Sobic004G250100 Sobic009G042500 Sobic009G042500 Sobic010G067000--Sobic009G042500 Sobic002G111700 Sobic002G111700 Sobic010G067000--Sobic002G111700 Sobic003G203100 Sobic003G203100 Sobic010G067000--Sobic003G203100 Sobic010G067000--Sobic009G226000 Sobic002G251800--Sobic005G028300 Sobic002G251800--Sobic007G038700 Sobic002G084400 Sobic002G084400 Sobic002G251800--Sobic002G084400 Sobic002G251800--Sobic006G271900 Sobic002G251800--Sobic001G040600 Sobic002G251800--Sobic008G099900 Sobic006G085900 Sobic006G085900 Sobic002G251800--Sobic006G085900 Sobic002G251800--Sobic007G060600 Sobic002G251800--Sobic001G049800 Sobic008G068100 Sobic008G068100 Sobic003G336500--Sobic008G068100 Sobic003G336500--Sobic001G040600 Sobic009G191500 Sobic009G191500 Sobic003G336500--Sobic009G191500 Sobic003G336500--Sobic007G060600 Sobic001G199500 Sobic001G199500 Sobic003G336500--Sobic001G199500 Sobic001G483800 Sobic001G483800 Sobic003G336500--Sobic001G483800 Sobic005G088900 Sobic005G088900 Sobic003G336500--Sobic005G088900 Sobic009G176300 Sobic009G176300 Sobic003G336500--Sobic009G176300 Sobic008G100400 Sobic008G100400 Sobic003G336500--Sobic008G100400 Sobic001G040600--Sobic007G060600 Sobic001G040600--Sobic006G271900 Sobic010G099300 Sobic010G099300 Sobic001G040600--Sobic010G099300 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic001G040600--Sobic003G051500 Sobic001G040600--Sobic008G100400 Sobic001G040600--Sobic001G081300 Sobic001G040600--Sobic002G251800
Octagon: transcription factors


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