Gene annotation
Transcriptome id Sobic.004G265300.11,Sobic.004G265300.17,Sobic.004G265300.8,Sobic.004G265300.2,Sobic.004G265300.12,Sobic.004G265300.13,Sobic.004G265300.10,Sobic.004G265300.16,Sobic.004G265300.7,Sobic.004G265300.9,Sobic.004G265300.1,Sobic.004G265300.18,Sobic.004G265300.4,Sobic.004G265300.14,Sobic.004G265300.15
Synonym
Functional annotation nucleolar complex protein 2, putative, expressed
UniProt A0A194YRT6 , A0A194YRP3 , A0A194YRU2 , A0A194YRU1 , A0A1Z5RP47
Pfam PF03715
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G18220 : Noc2p family
RAP-DB (Rice) LOC_Os10g35280.1 : nucleolar complex protein 2, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G265300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
2 Sobic.006G088820 - -
3 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
4 Sobic.003G325900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat, putative, expressed -
5 Sobic.001G453500 expressed protein -
6 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
7 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
8 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
9 Sobic.008G123200 AAA-type ATPase family protein, putative, expressed -
10 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
11 Sobic.010G032300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.003G067201 - -
13 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
14 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
15 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
16 Sobic.002G127900 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
17 Sobic.003G189333 - -
18 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
19 Sobic.009G066400 MAR-binding filament-like protein 1, putative, expressed -
20 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase


Gene co-expression network
sample Sobic004G265300 Sobic004G265300 Sobic007G038700 Sobic007G038700 Sobic004G265300--Sobic007G038700 Sobic006G088820 Sobic006G088820 Sobic004G265300--Sobic006G088820 Sobic006G140400 Sobic006G140400 Sobic004G265300--Sobic006G140400 Sobic003G325900 Sobic003G325900 Sobic004G265300--Sobic003G325900 Sobic001G453500 Sobic001G453500 Sobic004G265300--Sobic001G453500 Sobic005G028300 Sobic005G028300 Sobic004G265300--Sobic005G028300 Sobic009G105400 Sobic009G105400 Sobic004G265300--Sobic009G105400 Sobic009G176300 Sobic009G176300 Sobic004G265300--Sobic009G176300 Sobic008G123200 Sobic008G123200 Sobic004G265300--Sobic008G123200 Sobic002G251800 Sobic002G251800 Sobic007G038700--Sobic002G251800 Sobic010G277200 Sobic010G277200 Sobic007G038700--Sobic010G277200 Sobic007G038700--Sobic008G123200 Sobic003G336500 Sobic003G336500 Sobic007G038700--Sobic003G336500 Sobic007G038700--Sobic009G105400 Sobic005G078700 Sobic005G078700 Sobic007G038700--Sobic005G078700 Sobic001G194700 Sobic001G194700 Sobic007G038700--Sobic001G194700 Sobic003G153900 Sobic003G153900 Sobic007G038700--Sobic003G153900 Sobic008G031200 Sobic008G031200 Sobic007G038700--Sobic008G031200 Sobic006G088820--Sobic009G105400 Sobic010G143600 Sobic010G143600 Sobic006G088820--Sobic010G143600 Sobic006G088820--Sobic006G140400 Sobic006G088820--Sobic008G123200 Sobic006G088820--Sobic005G078700 Sobic006G088820--Sobic003G325900 Sobic006G088820--Sobic001G453500 Sobic003G184666 Sobic003G184666 Sobic006G088820--Sobic003G184666 Sobic002G127900 Sobic002G127900 Sobic006G088820--Sobic002G127900 Sobic006G140400--Sobic001G453500 Sobic010G224700 Sobic010G224700 Sobic006G140400--Sobic010G224700 Sobic002G112600 Sobic002G112600 Sobic006G140400--Sobic002G112600 Sobic002G386900 Sobic002G386900 Sobic006G140400--Sobic002G386900 Sobic004G215900 Sobic004G215900 Sobic006G140400--Sobic004G215900 Sobic010G032300 Sobic010G032300 Sobic006G140400--Sobic010G032300 Sobic004G027400 Sobic004G027400 Sobic006G140400--Sobic004G027400 Sobic007G017200 Sobic007G017200 Sobic006G140400--Sobic007G017200 Sobic002G043000 Sobic002G043000 Sobic006G140400--Sobic002G043000 Sobic003G325900--Sobic005G078700 Sobic004G282500 Sobic004G282500 Sobic003G325900--Sobic004G282500 Sobic003G325900--Sobic003G184666 Sobic001G268300 Sobic001G268300 Sobic003G325900--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic003G325900--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic003G325900--Sobic003G045450 Sobic003G325900--Sobic008G123200 Sobic003G325900--Sobic006G088820 Sobic003G412000 Sobic003G412000 Sobic003G325900--Sobic003G412000 Sobic006G111200 Sobic006G111200 Sobic001G453500--Sobic006G111200 Sobic001G368300 Sobic001G368300 Sobic001G453500--Sobic001G368300 Sobic004G151000 Sobic004G151000 Sobic001G453500--Sobic004G151000 Sobic001G453500--Sobic006G140400 Sobic001G453500--Sobic004G027400 Sobic004G027300 Sobic004G027300 Sobic001G453500--Sobic004G027300 Sobic001G049800 Sobic001G049800 Sobic001G453500--Sobic001G049800 Sobic001G453500--Sobic002G112600 Sobic001G453500--Sobic009G105400 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic003G419800 Sobic003G419800 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic001G391101 Sobic001G391101 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900 Sobic009G105400--Sobic006G088820 Sobic009G105400--Sobic001G453500 Sobic006G008300 Sobic006G008300 Sobic009G105400--Sobic006G008300 Sobic002G168000 Sobic002G168000 Sobic009G105400--Sobic002G168000 Sobic004G199200 Sobic004G199200 Sobic009G105400--Sobic004G199200 Sobic001G264201 Sobic001G264201 Sobic009G105400--Sobic001G264201 Sobic009G191500 Sobic009G191500 Sobic009G105400--Sobic009G191500 Sobic009G105400--Sobic010G143600 Sobic008G068100 Sobic008G068100 Sobic009G105400--Sobic008G068100 Sobic005G088900 Sobic005G088900 Sobic009G176300--Sobic005G088900 Sobic009G176300--Sobic008G068100 Sobic009G176300--Sobic009G191500 Sobic003G432300 Sobic003G432300 Sobic009G176300--Sobic003G432300 Sobic009G176300--Sobic003G336500 Sobic003G235700 Sobic003G235700 Sobic009G176300--Sobic003G235700 Sobic005G028100 Sobic005G028100 Sobic009G176300--Sobic005G028100 Sobic001G199500 Sobic001G199500 Sobic009G176300--Sobic001G199500 Sobic009G176300--Sobic004G027400 Sobic005G138000 Sobic005G138000 Sobic008G123200--Sobic005G138000 Sobic009G224300 Sobic009G224300 Sobic008G123200--Sobic009G224300 Sobic008G123200--Sobic003G336500 Sobic001G448000 Sobic001G448000 Sobic008G123200--Sobic001G448000 Sobic010G175000 Sobic010G175000 Sobic008G123200--Sobic010G175000 Sobic008G123200--Sobic007G038700 Sobic004G123200 Sobic004G123200 Sobic008G123200--Sobic004G123200 Sobic008G123200--Sobic009G105400 Sobic008G165266 Sobic008G165266 Sobic008G123200--Sobic008G165266
Octagon: transcription factors


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