Gene annotation
Transcriptome id Sobic.006G088820.1
Synonym -
Functional annotation -
UniProt A0A1Z5RCZ4
Pfam PF00646
Panther DB PTHR32212 PTHR32212:SF75
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G78750 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os04g35990.1 : OsFBX136 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU4Hr1G017290.4 , HORVU4Hr1G017290.3 , HORVU4Hr1G017290.2 , HORVU4Hr1G017290.1
Wheat TraesCS4B02G103600 , TraesCS4D02G100700 , TraesCS4D02G100700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
2 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
3 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
4 Sobic.008G123200 AAA-type ATPase family protein, putative, expressed -
5 Sobic.005G078700 OsFBX411 - F-box domain containing protein, expressed -
6 Sobic.003G325900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat, putative, expressed -
7 Sobic.001G453500 expressed protein -
8 Sobic.003G184666 - -
9 Sobic.002G127900 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
10 Sobic.004G027400 - -
11 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
12 Sobic.001G264201 - -
13 Sobic.004G265300 nucleolar complex protein 2, putative, expressed -
14 Sobic.004G148900 ankyrin, putative, expressed -
15 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
16 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
17 Sobic.002G284400 peroxisomal multifunctional enzyme type 2, putative, expressed -
18 Sobic.009G224300 expressed protein -
19 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
20 Sobic.007G082000 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic006G088820 Sobic006G088820 Sobic009G105400 Sobic009G105400 Sobic006G088820--Sobic009G105400 Sobic010G143600 Sobic010G143600 Sobic006G088820--Sobic010G143600 Sobic006G140400 Sobic006G140400 Sobic006G088820--Sobic006G140400 Sobic008G123200 Sobic008G123200 Sobic006G088820--Sobic008G123200 Sobic005G078700 Sobic005G078700 Sobic006G088820--Sobic005G078700 Sobic003G325900 Sobic003G325900 Sobic006G088820--Sobic003G325900 Sobic001G453500 Sobic001G453500 Sobic006G088820--Sobic001G453500 Sobic003G184666 Sobic003G184666 Sobic006G088820--Sobic003G184666 Sobic002G127900 Sobic002G127900 Sobic006G088820--Sobic002G127900 Sobic009G105400--Sobic006G088820 Sobic009G105400--Sobic001G453500 Sobic006G008300 Sobic006G008300 Sobic009G105400--Sobic006G008300 Sobic002G168000 Sobic002G168000 Sobic009G105400--Sobic002G168000 Sobic004G199200 Sobic004G199200 Sobic009G105400--Sobic004G199200 Sobic001G264201 Sobic001G264201 Sobic009G105400--Sobic001G264201 Sobic009G191500 Sobic009G191500 Sobic009G105400--Sobic009G191500 Sobic009G105400--Sobic010G143600 Sobic008G068100 Sobic008G068100 Sobic009G105400--Sobic008G068100 Sobic010G143600--Sobic005G078700 Sobic002G173400 Sobic002G173400 Sobic010G143600--Sobic002G173400 Sobic003G194800 Sobic003G194800 Sobic010G143600--Sobic003G194800 Sobic009G120400 Sobic009G120400 Sobic010G143600--Sobic009G120400 Sobic003G183466 Sobic003G183466 Sobic010G143600--Sobic003G183466 Sobic003G204100 Sobic003G204100 Sobic010G143600--Sobic003G204100 Sobic010G143600--Sobic006G008300 Sobic003G397100 Sobic003G397100 Sobic010G143600--Sobic003G397100 Sobic010G143600--Sobic003G184666 Sobic006G140400--Sobic001G453500 Sobic010G224700 Sobic010G224700 Sobic006G140400--Sobic010G224700 Sobic002G112600 Sobic002G112600 Sobic006G140400--Sobic002G112600 Sobic002G386900 Sobic002G386900 Sobic006G140400--Sobic002G386900 Sobic004G215900 Sobic004G215900 Sobic006G140400--Sobic004G215900 Sobic010G032300 Sobic010G032300 Sobic006G140400--Sobic010G032300 Sobic004G027400 Sobic004G027400 Sobic006G140400--Sobic004G027400 Sobic007G017200 Sobic007G017200 Sobic006G140400--Sobic007G017200 Sobic002G043000 Sobic002G043000 Sobic006G140400--Sobic002G043000 Sobic005G138000 Sobic005G138000 Sobic008G123200--Sobic005G138000 Sobic009G224300 Sobic009G224300 Sobic008G123200--Sobic009G224300 Sobic003G336500 Sobic003G336500 Sobic008G123200--Sobic003G336500 Sobic001G448000 Sobic001G448000 Sobic008G123200--Sobic001G448000 Sobic010G175000 Sobic010G175000 Sobic008G123200--Sobic010G175000 Sobic007G038700 Sobic007G038700 Sobic008G123200--Sobic007G038700 Sobic004G123200 Sobic004G123200 Sobic008G123200--Sobic004G123200 Sobic008G123200--Sobic009G105400 Sobic008G165266 Sobic008G165266 Sobic008G123200--Sobic008G165266 Sobic005G078700--Sobic003G325900 Sobic005G078700--Sobic010G143600 Sobic005G078700--Sobic003G184666 Sobic001G268300 Sobic001G268300 Sobic005G078700--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic005G078700--Sobic002G362200 Sobic006G262800 Sobic006G262800 Sobic005G078700--Sobic006G262800 Sobic004G282500 Sobic004G282500 Sobic005G078700--Sobic004G282500 Sobic009G154900 Sobic009G154900 Sobic005G078700--Sobic009G154900 Sobic005G078700--Sobic009G105400 Sobic003G325900--Sobic005G078700 Sobic003G325900--Sobic004G282500 Sobic003G325900--Sobic003G184666 Sobic003G325900--Sobic001G268300 Sobic003G325900--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic003G325900--Sobic003G045450 Sobic003G325900--Sobic008G123200 Sobic003G325900--Sobic006G088820 Sobic003G412000 Sobic003G412000 Sobic003G325900--Sobic003G412000 Sobic006G111200 Sobic006G111200 Sobic001G453500--Sobic006G111200 Sobic001G368300 Sobic001G368300 Sobic001G453500--Sobic001G368300 Sobic004G151000 Sobic004G151000 Sobic001G453500--Sobic004G151000 Sobic001G453500--Sobic006G140400 Sobic001G453500--Sobic004G027400 Sobic004G027300 Sobic004G027300 Sobic001G453500--Sobic004G027300 Sobic001G049800 Sobic001G049800 Sobic001G453500--Sobic001G049800 Sobic001G453500--Sobic002G112600 Sobic001G453500--Sobic009G105400 Sobic010G252200 Sobic010G252200 Sobic003G184666--Sobic010G252200 Sobic003G184666--Sobic005G078700 Sobic003G184666--Sobic010G143600 Sobic003G184666--Sobic003G183466 Sobic006G126800 Sobic006G126800 Sobic003G184666--Sobic006G126800 Sobic003G184666--Sobic003G325900 Sobic003G184666--Sobic003G045450 Sobic003G184666--Sobic002G362200 Sobic004G222150 Sobic004G222150 Sobic003G184666--Sobic004G222150 Sobic005G045700 Sobic005G045700 Sobic002G127900--Sobic005G045700 Sobic008G165300 Sobic008G165300 Sobic002G127900--Sobic008G165300 Sobic007G053100 Sobic007G053100 Sobic002G127900--Sobic007G053100 Sobic003G368901 Sobic003G368901 Sobic002G127900--Sobic003G368901 Sobic002G266300 Sobic002G266300 Sobic002G127900--Sobic002G266300 Sobic006G262501 Sobic006G262501 Sobic002G127900--Sobic006G262501 Sobic010G264900 Sobic010G264900 Sobic002G127900--Sobic010G264900 Sobic009G155900 Sobic009G155900 Sobic002G127900--Sobic009G155900 Sobic001G125300 Sobic001G125300 Sobic002G127900--Sobic001G125300
Octagon: transcription factors


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