Gene annotation
Transcriptome id Sobic.001G440300.1
Synonym
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6QPF6
Pfam PF13041 PF01535 PF14432 PF12854
Panther DB PTHR24015:SF397 PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G49142 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g13830.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a001520
Brachypodium PNT77770
Barley HORVU4Hr1G063960.3 , HORVU4Hr1G063960.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
2 Sobic.003G325900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat, putative, expressed -
3 Sobic.008G000600 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
4 Sobic.004G282500 PPR repeat domain containing protein, putative, expressed -
5 Sobic.003G184666 - -
6 Sobic.005G075800 rp3 protein, putative, expressed -
7 Sobic.005G078700 OsFBX411 - F-box domain containing protein, expressed -
8 Sobic.008G149200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@vegetative storage protein, putative, expressed -
9 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
10 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
11 Sobic.002G367200 RNA-binding protein-like, putative, expressed -
12 Sobic.007G082000 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
13 Sobic.008G041000 expressed protein -
14 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
16 Sobic.008G171500 PPR repeat containing protein, expressed -
17 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
18 Sobic.001G292800 pentatricopeptide, putative, expressed -
19 Sobic.007G017200 OsFBX142 - F-box domain containing protein, expressed -
20 Sobic.003G326500 apurinic endonuclease-redox protein, putative, expressed K01142: E3.1.11.2, exodeoxyribonuclease III


Gene co-expression network
sample Sobic001G440300 Sobic001G440300 Sobic002G084400 Sobic002G084400 Sobic001G440300--Sobic002G084400 Sobic003G325900 Sobic003G325900 Sobic001G440300--Sobic003G325900 Sobic008G000600 Sobic008G000600 Sobic001G440300--Sobic008G000600 Sobic004G282500 Sobic004G282500 Sobic001G440300--Sobic004G282500 Sobic003G184666 Sobic003G184666 Sobic001G440300--Sobic003G184666 Sobic005G075800 Sobic005G075800 Sobic001G440300--Sobic005G075800 Sobic005G078700 Sobic005G078700 Sobic001G440300--Sobic005G078700 Sobic008G149200 Sobic008G149200 Sobic001G440300--Sobic008G149200 Sobic009G176300 Sobic009G176300 Sobic001G440300--Sobic009G176300 Sobic010G232700 Sobic010G232700 Sobic002G084400--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic002G084400--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic002G084400--Sobic006G085900 Sobic002G251800 Sobic002G251800 Sobic002G084400--Sobic002G251800 Sobic005G028300 Sobic005G028300 Sobic002G084400--Sobic005G028300 Sobic006G069100 Sobic006G069100 Sobic002G084400--Sobic006G069100 Sobic008G031200 Sobic008G031200 Sobic002G084400--Sobic008G031200 Sobic008G171500 Sobic008G171500 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic003G325900--Sobic005G078700 Sobic003G325900--Sobic004G282500 Sobic003G325900--Sobic003G184666 Sobic001G268300 Sobic001G268300 Sobic003G325900--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic003G325900--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic003G325900--Sobic003G045450 Sobic008G123200 Sobic008G123200 Sobic003G325900--Sobic008G123200 Sobic006G088820 Sobic006G088820 Sobic003G325900--Sobic006G088820 Sobic003G412000 Sobic003G412000 Sobic003G325900--Sobic003G412000 Sobic003G432300 Sobic003G432300 Sobic008G000600--Sobic003G432300 Sobic001G334100 Sobic001G334100 Sobic008G000600--Sobic001G334100 Sobic002G182000 Sobic002G182000 Sobic008G000600--Sobic002G182000 Sobic003G259600 Sobic003G259600 Sobic008G000600--Sobic003G259600 Sobic008G000600--Sobic006G069100 Sobic010G099800 Sobic010G099800 Sobic008G000600--Sobic010G099800 Sobic002G126800 Sobic002G126800 Sobic008G000600--Sobic002G126800 Sobic003G235700 Sobic003G235700 Sobic008G000600--Sobic003G235700 Sobic002G399900 Sobic002G399900 Sobic008G000600--Sobic002G399900 Sobic004G282500--Sobic001G268300 Sobic006G262800 Sobic006G262800 Sobic004G282500--Sobic006G262800 Sobic004G282500--Sobic003G325900 Sobic004G282500--Sobic005G078700 Sobic001G122200 Sobic001G122200 Sobic004G282500--Sobic001G122200 Sobic009G154900 Sobic009G154900 Sobic004G282500--Sobic009G154900 Sobic001G203600 Sobic001G203600 Sobic004G282500--Sobic001G203600 Sobic004G282500--Sobic008G031200 Sobic004G282500--Sobic003G412000 Sobic010G252200 Sobic010G252200 Sobic003G184666--Sobic010G252200 Sobic003G184666--Sobic005G078700 Sobic010G143600 Sobic010G143600 Sobic003G184666--Sobic010G143600 Sobic003G183466 Sobic003G183466 Sobic003G184666--Sobic003G183466 Sobic006G126800 Sobic006G126800 Sobic003G184666--Sobic006G126800 Sobic003G184666--Sobic003G325900 Sobic003G184666--Sobic003G045450 Sobic003G184666--Sobic002G362200 Sobic004G222150 Sobic004G222150 Sobic003G184666--Sobic004G222150 Sobic005G075800--Sobic003G184666 Sobic010G068900 Sobic010G068900 Sobic005G075800--Sobic010G068900 Sobic005G075800--Sobic003G325900 Sobic005G075800--Sobic004G282500 Sobic009G014000 Sobic009G014000 Sobic005G075800--Sobic009G014000 Sobic005G075800--Sobic001G268300 Sobic006G106300 Sobic006G106300 Sobic005G075800--Sobic006G106300 Sobic004G030600 Sobic004G030600 Sobic005G075800--Sobic004G030600 Sobic002G290100 Sobic002G290100 Sobic005G075800--Sobic002G290100 Sobic005G078700--Sobic003G325900 Sobic005G078700--Sobic010G143600 Sobic005G078700--Sobic003G184666 Sobic005G078700--Sobic001G268300 Sobic005G078700--Sobic002G362200 Sobic005G078700--Sobic006G262800 Sobic005G078700--Sobic004G282500 Sobic005G078700--Sobic009G154900 Sobic009G105400 Sobic009G105400 Sobic005G078700--Sobic009G105400 Sobic008G149200--Sobic002G084400 Sobic008G149200--Sobic010G232700 Sobic001G347100 Sobic001G347100 Sobic008G149200--Sobic001G347100 Sobic008G165200 Sobic008G165200 Sobic008G149200--Sobic008G165200 Sobic008G163400 Sobic008G163400 Sobic008G149200--Sobic008G163400 Sobic008G149200--Sobic008G041000 Sobic009G063500 Sobic009G063500 Sobic008G149200--Sobic009G063500 Sobic008G149200--Sobic006G085900 Sobic001G149100 Sobic001G149100 Sobic008G149200--Sobic001G149100 Sobic005G088900 Sobic005G088900 Sobic009G176300--Sobic005G088900 Sobic008G068100 Sobic008G068100 Sobic009G176300--Sobic008G068100 Sobic009G191500 Sobic009G191500 Sobic009G176300--Sobic009G191500 Sobic009G176300--Sobic003G432300 Sobic003G336500 Sobic003G336500 Sobic009G176300--Sobic003G336500 Sobic009G176300--Sobic003G235700 Sobic005G028100 Sobic005G028100 Sobic009G176300--Sobic005G028100 Sobic001G199500 Sobic001G199500 Sobic009G176300--Sobic001G199500 Sobic004G027400 Sobic004G027400 Sobic009G176300--Sobic004G027400
Octagon: transcription factors


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