Gene annotation
Transcriptome id Sobic.009G042500.1
Synonym Sb09g003570
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5Z016
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF563
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05340 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os05g05490.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a055394
Brachypodium KQK07539
Barley HORVU7Hr1G050230.1 , HORVU7Hr1G018390.1 , HORVU1Hr1G020010.2 , HORVU1Hr1G020010.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G202700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.001G200600 PPR repeat domain containing protein, putative, expressed -
3 Sobic.003G433600 pentatricopeptide, putative, expressed -
4 Sobic.006G266000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.001G226200 expressed protein -
6 Sobic.010G067000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.004G250100 pentatricopeptide, putative, expressed -
8 Sobic.010G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.002G292400 - -
10 Sobic.010G085000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.009G014500 expressed protein -
12 Sobic.003G276500 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
13 Sobic.002G095800 expressed protein -
14 Sobic.008G174850 - -
15 Sobic.008G149200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@vegetative storage protein, putative, expressed -
16 Sobic.007G179500 - -
17 Sobic.002G074500 shugoshin-1, putative, expressed -
18 Sobic.007G216401 - -
19 Sobic.001G491500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.008G177750 - -


Gene co-expression network
sample Sobic009G042500 Sobic009G042500 Sobic003G202700 Sobic003G202700 Sobic009G042500--Sobic003G202700 Sobic001G200600 Sobic001G200600 Sobic009G042500--Sobic001G200600 Sobic003G433600 Sobic003G433600 Sobic009G042500--Sobic003G433600 Sobic006G266000 Sobic006G266000 Sobic009G042500--Sobic006G266000 Sobic001G226200 Sobic001G226200 Sobic009G042500--Sobic001G226200 Sobic010G067000 Sobic010G067000 Sobic009G042500--Sobic010G067000 Sobic004G250100 Sobic004G250100 Sobic009G042500--Sobic004G250100 Sobic010G066900 Sobic010G066900 Sobic009G042500--Sobic010G066900 Sobic002G292400 Sobic002G292400 Sobic009G042500--Sobic002G292400 Sobic001G491500 Sobic001G491500 Sobic003G202700--Sobic001G491500 Sobic007G028766 Sobic007G028766 Sobic003G202700--Sobic007G028766 Sobic008G167900 Sobic008G167900 Sobic003G202700--Sobic008G167900 Sobic001G072100 Sobic001G072100 Sobic003G202700--Sobic001G072100 Sobic003G032301 Sobic003G032301 Sobic003G202700--Sobic003G032301 Sobic005G110350 Sobic005G110350 Sobic003G202700--Sobic005G110350 Sobic008G104350 Sobic008G104350 Sobic003G202700--Sobic008G104350 Sobic003G288700 Sobic003G288700 Sobic003G202700--Sobic003G288700 Sobic006G233900 Sobic006G233900 Sobic003G202700--Sobic006G233900 Sobic001G200600--Sobic004G250100 Sobic001G200600--Sobic009G042500 Sobic001G200600--Sobic003G433600 Sobic007G179500 Sobic007G179500 Sobic001G200600--Sobic007G179500 Sobic010G092801 Sobic010G092801 Sobic001G200600--Sobic010G092801 Sobic003G203100 Sobic003G203100 Sobic001G200600--Sobic003G203100 Sobic001G490700 Sobic001G490700 Sobic001G200600--Sobic001G490700 Sobic001G200600--Sobic010G067000 Sobic008G041000 Sobic008G041000 Sobic001G200600--Sobic008G041000 Sobic003G433600--Sobic004G250100 Sobic003G433600--Sobic003G202700 Sobic003G433600--Sobic001G200600 Sobic007G013200 Sobic007G013200 Sobic003G433600--Sobic007G013200 Sobic003G433600--Sobic001G490700 Sobic003G433600--Sobic003G032301 Sobic003G433600--Sobic001G491500 Sobic008G178300 Sobic008G178300 Sobic003G433600--Sobic008G178300 Sobic006G222901 Sobic006G222901 Sobic003G433600--Sobic006G222901 Sobic006G266000--Sobic009G042500 Sobic006G266000--Sobic010G066900 Sobic010G213000 Sobic010G213000 Sobic006G266000--Sobic010G213000 Sobic007G199800 Sobic007G199800 Sobic006G266000--Sobic007G199800 Sobic003G375100 Sobic003G375100 Sobic006G266000--Sobic003G375100 Sobic002G051900 Sobic002G051900 Sobic006G266000--Sobic002G051900 Sobic002G367200 Sobic002G367200 Sobic006G266000--Sobic002G367200 Sobic001G166100 Sobic001G166100 Sobic006G266000--Sobic001G166100 Sobic003G240000 Sobic003G240000 Sobic006G266000--Sobic003G240000 Sobic010G045966 Sobic010G045966 Sobic001G226200--Sobic010G045966 Sobic001G226200--Sobic001G491500 Sobic009G210800 Sobic009G210800 Sobic001G226200--Sobic009G210800 Sobic009G255400 Sobic009G255400 Sobic001G226200--Sobic009G255400 Sobic001G226200--Sobic003G202700 Sobic002G316400 Sobic002G316400 Sobic001G226200--Sobic002G316400 Sobic002G325000 Sobic002G325000 Sobic001G226200--Sobic002G325000 Sobic007G182700 Sobic007G182700 Sobic001G226200--Sobic007G182700 Sobic007G183500 Sobic007G183500 Sobic001G226200--Sobic007G183500 Sobic010G067000--Sobic001G200600 Sobic010G067000--Sobic003G433600 Sobic008G009300 Sobic008G009300 Sobic010G067000--Sobic008G009300 Sobic010G067000--Sobic007G179500 Sobic010G067000--Sobic004G250100 Sobic010G067000--Sobic009G042500 Sobic002G111700 Sobic002G111700 Sobic010G067000--Sobic002G111700 Sobic010G067000--Sobic003G203100 Sobic009G226000 Sobic009G226000 Sobic010G067000--Sobic009G226000 Sobic004G250100--Sobic007G179500 Sobic004G250100--Sobic003G433600 Sobic004G250100--Sobic001G200600 Sobic003G213800 Sobic003G213800 Sobic004G250100--Sobic003G213800 Sobic010G143400 Sobic010G143400 Sobic004G250100--Sobic010G143400 Sobic004G250100--Sobic001G490700 Sobic004G250100--Sobic008G178300 Sobic002G385200 Sobic002G385200 Sobic004G250100--Sobic002G385200 Sobic001G527600 Sobic001G527600 Sobic004G250100--Sobic001G527600 Sobic001G149100 Sobic001G149100 Sobic010G066900--Sobic001G149100 Sobic004G176500 Sobic004G176500 Sobic010G066900--Sobic004G176500 Sobic009G238700 Sobic009G238700 Sobic010G066900--Sobic009G238700 Sobic008G163400 Sobic008G163400 Sobic010G066900--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic010G066900--Sobic004G241000 Sobic003G299200 Sobic003G299200 Sobic010G066900--Sobic003G299200 Sobic003G239000 Sobic003G239000 Sobic010G066900--Sobic003G239000 Sobic001G347100 Sobic001G347100 Sobic010G066900--Sobic001G347100 Sobic007G123100 Sobic007G123100 Sobic010G066900--Sobic007G123100 Sobic002G292400--Sobic007G183500 Sobic001G205600 Sobic001G205600 Sobic002G292400--Sobic001G205600 Sobic005G026500 Sobic005G026500 Sobic002G292400--Sobic005G026500 Sobic006G223700 Sobic006G223700 Sobic002G292400--Sobic006G223700 Sobic003G318350 Sobic003G318350 Sobic002G292400--Sobic003G318350 Sobic004G149433 Sobic004G149433 Sobic002G292400--Sobic004G149433 Sobic001G423900 Sobic001G423900 Sobic002G292400--Sobic001G423900 Sobic007G003300 Sobic007G003300 Sobic002G292400--Sobic007G003300 Sobic003G088300 Sobic003G088300 Sobic002G292400--Sobic003G088300
Octagon: transcription factors


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