Gene annotation
Transcriptome id Sobic.002G074500.22,Sobic.002G074500.20,Sobic.002G074500.14,Sobic.002G074500.21,Sobic.002G074500.18,Sobic.002G074500.12,Sobic.002G074500.13,Sobic.002G074500.16,Sobic.002G074500.15,Sobic.002G074500.19,Sobic.002G074500.17
Synonym
Functional annotation shugoshin-1, putative, expressed
UniProt A0A1W0W2R4 , A0A1W0W2V3 , A0A1W0W2R9 , A0A1W0W2V8 , A0A1W0W2T4 , A0A1W0W2T3 , A0A1W0W2S9 , A0A1W0W2V2 , A0A1W0W2U4 , A0A1W0W2T8 , A0A1W0W2N8
Pfam PF07557
Panther DB PTHR34373 PTHR34373:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0000775chromosome, centromeric region


Orthologs (automatic annotation)
TAIR AT5G04320 : Shugoshin C terminus
RAP-DB (Rice) LOC_Os02g55570.1 : shugoshin-1, putative, expressed
MaizeGDB (Corn) Zm00025a045373
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G074500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G384100 ZIP4/SPO22, putative, expressed -
2 Sobic.002G239800 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
3 Sobic.009G014500 expressed protein -
4 Sobic.002G390700 serine/threonine-protein kinase Haspin, putative, expressed K16315: serine/threonine-protein kinase haspin
5 Sobic.001G497800 DUF623 domain containing protein, expressed -
6 Sobic.006G087800 DDT domain containing protein, putative, expressed -
7 Sobic.001G538275 - -
8 Sobic.002G095800 expressed protein -
9 Sobic.001G001700 - -
10 Sobic.001G088000 expressed protein -
11 Sobic.007G052100 - -
12 Sobic.010G058400 expressed protein -
13 Sobic.007G121800 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
14 Sobic.010G078400 expressed protein -
15 Sobic.007G097000 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
16 Sobic.005G050700 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
17 Sobic.010G009100 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
18 Sobic.003G059600 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
19 Sobic.006G234500 OsFBD10 - F-box and FBD domain containing protein, expressed -
20 Sobic.001G491500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic002G074500 Sobic002G074500 Sobic003G384100 Sobic003G384100 Sobic002G074500--Sobic003G384100 Sobic002G239800 Sobic002G239800 Sobic002G074500--Sobic002G239800 Sobic009G014500 Sobic009G014500 Sobic002G074500--Sobic009G014500 Sobic002G390700 Sobic002G390700 Sobic002G074500--Sobic002G390700 Sobic001G497800 Sobic001G497800 Sobic002G074500--Sobic001G497800 Sobic006G087800 Sobic006G087800 Sobic002G074500--Sobic006G087800 Sobic001G538275 Sobic001G538275 Sobic002G074500--Sobic001G538275 Sobic002G095800 Sobic002G095800 Sobic002G074500--Sobic002G095800 Sobic001G001700 Sobic001G001700 Sobic002G074500--Sobic001G001700 Sobic003G384100--Sobic002G074500 Sobic010G237200 Sobic010G237200 Sobic003G384100--Sobic010G237200 Sobic003G063500 Sobic003G063500 Sobic003G384100--Sobic003G063500 Sobic007G143900 Sobic007G143900 Sobic003G384100--Sobic007G143900 Sobic003G384100--Sobic002G239800 Sobic003G384100--Sobic002G095800 Sobic007G172900 Sobic007G172900 Sobic003G384100--Sobic007G172900 Sobic004G041000 Sobic004G041000 Sobic003G384100--Sobic004G041000 Sobic010G046200 Sobic010G046200 Sobic003G384100--Sobic010G046200 Sobic002G239800--Sobic002G074500 Sobic003G217566 Sobic003G217566 Sobic002G239800--Sobic003G217566 Sobic003G242300 Sobic003G242300 Sobic002G239800--Sobic003G242300 Sobic010G135700 Sobic010G135700 Sobic002G239800--Sobic010G135700 Sobic001G355850 Sobic001G355850 Sobic002G239800--Sobic001G355850 Sobic002G428301 Sobic002G428301 Sobic002G239800--Sobic002G428301 Sobic002G239800--Sobic001G538275 Sobic006G192000 Sobic006G192000 Sobic002G239800--Sobic006G192000 Sobic008G191800 Sobic008G191800 Sobic002G239800--Sobic008G191800 Sobic009G014500--Sobic002G074500 Sobic009G014500--Sobic002G390700 Sobic001G088000 Sobic001G088000 Sobic009G014500--Sobic001G088000 Sobic009G014500--Sobic002G095800 Sobic003G025100 Sobic003G025100 Sobic009G014500--Sobic003G025100 Sobic009G014500--Sobic003G384100 Sobic009G042500 Sobic009G042500 Sobic009G014500--Sobic009G042500 Sobic001G221601 Sobic001G221601 Sobic009G014500--Sobic001G221601 Sobic009G166650 Sobic009G166650 Sobic009G014500--Sobic009G166650 Sobic010G078400 Sobic010G078400 Sobic002G390700--Sobic010G078400 Sobic001G303300 Sobic001G303300 Sobic002G390700--Sobic001G303300 Sobic002G390700--Sobic001G221601 Sobic002G390700--Sobic002G074500 Sobic003G106800 Sobic003G106800 Sobic002G390700--Sobic003G106800 Sobic003G092000 Sobic003G092000 Sobic002G390700--Sobic003G092000 Sobic002G390700--Sobic009G166650 Sobic002G390700--Sobic009G014500 Sobic002G390700--Sobic002G239800 Sobic010G058400 Sobic010G058400 Sobic001G497800--Sobic010G058400 Sobic001G497800--Sobic002G074500 Sobic004G299200 Sobic004G299200 Sobic001G497800--Sobic004G299200 Sobic003G049000 Sobic003G049000 Sobic001G497800--Sobic003G049000 Sobic006G234500 Sobic006G234500 Sobic001G497800--Sobic006G234500 Sobic004G205700 Sobic004G205700 Sobic001G497800--Sobic004G205700 Sobic001G497800--Sobic003G092000 Sobic001G497800--Sobic010G078400 Sobic007G157400 Sobic007G157400 Sobic001G497800--Sobic007G157400 Sobic010G059400 Sobic010G059400 Sobic006G087800--Sobic010G059400 Sobic006G087800--Sobic001G538275 Sobic005G050700 Sobic005G050700 Sobic006G087800--Sobic005G050700 Sobic007G121800 Sobic007G121800 Sobic006G087800--Sobic007G121800 Sobic003G267400 Sobic003G267400 Sobic006G087800--Sobic003G267400 Sobic003G244401 Sobic003G244401 Sobic006G087800--Sobic003G244401 Sobic010G064800 Sobic010G064800 Sobic006G087800--Sobic010G064800 Sobic006G087800--Sobic002G074500 Sobic003G108300 Sobic003G108300 Sobic006G087800--Sobic003G108300 Sobic001G538275--Sobic003G267400 Sobic001G538275--Sobic003G108300 Sobic003G025500 Sobic003G025500 Sobic001G538275--Sobic003G025500 Sobic001G538275--Sobic007G121800 Sobic010G263151 Sobic010G263151 Sobic001G538275--Sobic010G263151 Sobic001G538275--Sobic006G087800 Sobic007G203600 Sobic007G203600 Sobic001G538275--Sobic007G203600 Sobic001G538275--Sobic010G135700 Sobic006G196800 Sobic006G196800 Sobic001G538275--Sobic006G196800 Sobic002G095800--Sobic003G384100 Sobic002G095800--Sobic009G166650 Sobic002G095800--Sobic002G074500 Sobic002G095800--Sobic002G390700 Sobic002G095800--Sobic007G172900 Sobic002G095800--Sobic006G234500 Sobic002G095200 Sobic002G095200 Sobic002G095800--Sobic002G095200 Sobic002G095800--Sobic010G046200 Sobic002G095800--Sobic001G303300 Sobic008G093700 Sobic008G093700 Sobic001G001700--Sobic008G093700 Sobic006G137300 Sobic006G137300 Sobic001G001700--Sobic006G137300 Sobic001G001700--Sobic002G074500 Sobic001G001700--Sobic010G078400 Sobic010G009100 Sobic010G009100 Sobic001G001700--Sobic010G009100 Sobic010G081300 Sobic010G081300 Sobic001G001700--Sobic010G081300 Sobic001G001700--Sobic002G239800 Sobic003G344950 Sobic003G344950 Sobic001G001700--Sobic003G344950 Sobic006G129300 Sobic006G129300 Sobic001G001700--Sobic006G129300
Octagon: transcription factors


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