Gene annotation
Transcriptome id Sobic.006G266000.1
Synonym Sb06g032835
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1B6PP43
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF374
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G33170 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g57940.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a009309
Brachypodium KQK11670
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G042500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.010G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.010G213000 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
4 Sobic.007G199800 BTB/POZ domain containing protein, expressed K10523: speckle-type POZ protein
5 Sobic.003G375100 snRK1-interacting protein 1, putative, expressed -
6 Sobic.002G051900 high level expression during drought stress(PubMedID : 27006630)@RHsf 5(PubMedID : 27006630)@heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
7 Sobic.002G367200 RNA-binding protein-like, putative, expressed -
8 Sobic.001G166100 B3 DNA binding domain containing protein, expressed -
9 Sobic.003G240000 DUF538 domain containing protein, putative, expressed -
10 Sobic.008G000700 RNase P subunit p30, putative, expressed -
11 Sobic.001G043700 expressed protein -
12 Sobic.009G014500 expressed protein -
13 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.003G352100 pentatricopeptide, putative, expressed -
15 Sobic.002G326900 expressed protein K16584: HAUS augmin-like complex subunit 1
16 Sobic.005G030600 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
17 Sobic.001G499800 expansin precursor, putative, expressed -
18 Sobic.002G074500 shugoshin-1, putative, expressed -
19 Sobic.001G366600 OsFBX51 - F-box domain containing protein, expressed -
20 Sobic.006G267800 WD-40 repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic006G266000 Sobic006G266000 Sobic009G042500 Sobic009G042500 Sobic006G266000--Sobic009G042500 Sobic010G066900 Sobic010G066900 Sobic006G266000--Sobic010G066900 Sobic010G213000 Sobic010G213000 Sobic006G266000--Sobic010G213000 Sobic007G199800 Sobic007G199800 Sobic006G266000--Sobic007G199800 Sobic003G375100 Sobic003G375100 Sobic006G266000--Sobic003G375100 Sobic002G051900 Sobic002G051900 Sobic006G266000--Sobic002G051900 Sobic002G367200 Sobic002G367200 Sobic006G266000--Sobic002G367200 Sobic001G166100 Sobic001G166100 Sobic006G266000--Sobic001G166100 Sobic003G240000 Sobic003G240000 Sobic006G266000--Sobic003G240000 Sobic003G202700 Sobic003G202700 Sobic009G042500--Sobic003G202700 Sobic001G200600 Sobic001G200600 Sobic009G042500--Sobic001G200600 Sobic003G433600 Sobic003G433600 Sobic009G042500--Sobic003G433600 Sobic009G042500--Sobic006G266000 Sobic001G226200 Sobic001G226200 Sobic009G042500--Sobic001G226200 Sobic010G067000 Sobic010G067000 Sobic009G042500--Sobic010G067000 Sobic004G250100 Sobic004G250100 Sobic009G042500--Sobic004G250100 Sobic009G042500--Sobic010G066900 Sobic002G292400 Sobic002G292400 Sobic009G042500--Sobic002G292400 Sobic001G149100 Sobic001G149100 Sobic010G066900--Sobic001G149100 Sobic004G176500 Sobic004G176500 Sobic010G066900--Sobic004G176500 Sobic009G238700 Sobic009G238700 Sobic010G066900--Sobic009G238700 Sobic008G163400 Sobic008G163400 Sobic010G066900--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic010G066900--Sobic004G241000 Sobic003G299200 Sobic003G299200 Sobic010G066900--Sobic003G299200 Sobic003G239000 Sobic003G239000 Sobic010G066900--Sobic003G239000 Sobic001G347100 Sobic001G347100 Sobic010G066900--Sobic001G347100 Sobic007G123100 Sobic007G123100 Sobic010G066900--Sobic007G123100 Sobic006G276900 Sobic006G276900 Sobic010G213000--Sobic006G276900 Sobic001G061400 Sobic001G061400 Sobic010G213000--Sobic001G061400 Sobic001G519100 Sobic001G519100 Sobic010G213000--Sobic001G519100 Sobic007G067900 Sobic007G067900 Sobic010G213000--Sobic007G067900 Sobic007G097100 Sobic007G097100 Sobic010G213000--Sobic007G097100 Sobic002G265200 Sobic002G265200 Sobic010G213000--Sobic002G265200 Sobic001G088400 Sobic001G088400 Sobic010G213000--Sobic001G088400 Sobic001G170301 Sobic001G170301 Sobic010G213000--Sobic001G170301 Sobic001G075700 Sobic001G075700 Sobic010G213000--Sobic001G075700 Sobic009G060600 Sobic009G060600 Sobic007G199800--Sobic009G060600 Sobic007G050800 Sobic007G050800 Sobic007G199800--Sobic007G050800 Sobic003G236150 Sobic003G236150 Sobic007G199800--Sobic003G236150 Sobic005G036200 Sobic005G036200 Sobic007G199800--Sobic005G036200 Sobic007G199800--Sobic002G367200 Sobic002G055800 Sobic002G055800 Sobic007G199800--Sobic002G055800 Sobic007G192200 Sobic007G192200 Sobic007G199800--Sobic007G192200 Sobic009G002200 Sobic009G002200 Sobic007G199800--Sobic009G002200 Sobic009G012600 Sobic009G012600 Sobic007G199800--Sobic009G012600 Sobic002G136600 Sobic002G136600 Sobic003G375100--Sobic002G136600 Sobic003G276500 Sobic003G276500 Sobic003G375100--Sobic003G276500 Sobic010G054300 Sobic010G054300 Sobic003G375100--Sobic010G054300 Sobic010G082850 Sobic010G082850 Sobic003G375100--Sobic010G082850 Sobic004G252100 Sobic004G252100 Sobic003G375100--Sobic004G252100 Sobic002G074200 Sobic002G074200 Sobic003G375100--Sobic002G074200 Sobic003G289601 Sobic003G289601 Sobic003G375100--Sobic003G289601 Sobic003G310600 Sobic003G310600 Sobic003G375100--Sobic003G310600 Sobic001G162800 Sobic001G162800 Sobic003G375100--Sobic001G162800 Sobic002G051900--Sobic007G199800 Sobic002G051900--Sobic003G240000 Sobic001G320000 Sobic001G320000 Sobic002G051900--Sobic001G320000 Sobic003G130400 Sobic003G130400 Sobic002G051900--Sobic003G130400 Sobic002G185100 Sobic002G185100 Sobic002G051900--Sobic002G185100 Sobic007G162700 Sobic007G162700 Sobic002G051900--Sobic007G162700 Sobic001G375800 Sobic001G375800 Sobic002G051900--Sobic001G375800 Sobic002G051900--Sobic005G036200 Sobic009G233000 Sobic009G233000 Sobic002G051900--Sobic009G233000 Sobic009G028100 Sobic009G028100 Sobic002G367200--Sobic009G028100 Sobic003G122800 Sobic003G122800 Sobic002G367200--Sobic003G122800 Sobic003G102700 Sobic003G102700 Sobic002G367200--Sobic003G102700 Sobic002G095300 Sobic002G095300 Sobic002G367200--Sobic002G095300 Sobic002G367200--Sobic007G199800 Sobic002G367200--Sobic007G050800 Sobic005G068800 Sobic005G068800 Sobic002G367200--Sobic005G068800 Sobic009G224300 Sobic009G224300 Sobic002G367200--Sobic009G224300 Sobic007G082000 Sobic007G082000 Sobic002G367200--Sobic007G082000 Sobic001G405200 Sobic001G405200 Sobic001G166100--Sobic001G405200 Sobic002G251050 Sobic002G251050 Sobic001G166100--Sobic002G251050 Sobic003G407950 Sobic003G407950 Sobic001G166100--Sobic003G407950 Sobic010G111450 Sobic010G111450 Sobic001G166100--Sobic010G111450 Sobic002G040201 Sobic002G040201 Sobic001G166100--Sobic002G040201 Sobic009G121150 Sobic009G121150 Sobic001G166100--Sobic009G121150 Sobic006G029250 Sobic006G029250 Sobic001G166100--Sobic006G029250 Sobic009G034250 Sobic009G034250 Sobic001G166100--Sobic009G034250 Sobic006G076100 Sobic006G076100 Sobic001G166100--Sobic006G076100 Sobic003G240000--Sobic002G051900 Sobic003G240000--Sobic001G320000 Sobic009G222400 Sobic009G222400 Sobic003G240000--Sobic009G222400 Sobic003G240000--Sobic003G102700 Sobic003G247000 Sobic003G247000 Sobic003G240000--Sobic003G247000 Sobic003G240000--Sobic001G170301 Sobic003G240000--Sobic007G097100 Sobic007G023500 Sobic007G023500 Sobic003G240000--Sobic007G023500 Sobic002G168000 Sobic002G168000 Sobic003G240000--Sobic002G168000
Octagon: transcription factors


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