Gene annotation
Transcriptome id Sobic.005G030600.1
Synonym NRPE5, RPB5B, Sb05g002600
Functional annotation DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed
UniProt C5Y4H1
Pfam PF03871 PF01191
Panther DB PTHR10535 PTHR10535:SF2
NCBI CDD KOG3218; RNA polymerase, 25-kDa subunit (common to polymerases I, II and III)
KEGG Orthology K03013; RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G57080 : Eukaryotic rpb5 RNA polymerase subunit family protein
RAP-DB (Rice) LOC_Os12g04510.1 : DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed
MaizeGDB (Corn) Zm00025a013064
Brachypodium KQJ92354
Barley HORVU0Hr1G038750.1 , HORVU0Hr1G038750.3 , HORVU0Hr1G038750.2
Wheat TraesCS4D02G128200 , TraesCS4B02G133200 , TraesCS4B02G133200 , TraesCS4A02G185400 , TraesCS4A02G185400
Populus -


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cDNA sequences
Sobic.005G030600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G306500 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
2 Sobic.003G107000 receptor-like protein kinase precursor, putative, expressed -
3 Sobic.001G365266 - -
4 Sobic.009G103300 expressed protein -
5 Sobic.004G053100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.004G248300 dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
7 Sobic.010G254700 ternary complex factor MIP1, putative, expressed -
8 Sobic.003G186600 OsFBX13 - F-box domain containing protein, expressed -
9 Sobic.005G100500 RNA polymerase subunit, putative, expressed K03020: RPC19, DNA-directed RNA polymerases I and III subunit RPAC2
10 Sobic.005G110562 - -
11 Sobic.009G192700 ATBARD1/BARD1, putative, expressed K10683: BRCA1-associated RING domain protein 1
12 Sobic.009G213950 - K04799: FEN1, flap endonuclease-1
13 Sobic.006G266000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.001G221601 - -
15 Sobic.003G442800 PPR repeat containing protein, expressed -
16 Sobic.008G075100 hhH-GPD superfamily base excision DNA repair protein, putative, expressed K03575: A/G-specific adenine glycosylase
17 Sobic.001G105000 basic helix-loop-helix protein, putative, expressed -
18 Sobic.010G020900 OsFBX291 - F-box domain containing protein, expressed -
19 Sobic.001G292500 - -
20 Sobic.005G143100 expressed protein -


Gene co-expression network
sample Sobic005G030600 Sobic005G030600 Sobic002G306500 Sobic002G306500 Sobic005G030600--Sobic002G306500 Sobic003G107000 Sobic003G107000 Sobic005G030600--Sobic003G107000 Sobic001G365266 Sobic001G365266 Sobic005G030600--Sobic001G365266 Sobic009G103300 Sobic009G103300 Sobic005G030600--Sobic009G103300 Sobic004G053100 Sobic004G053100 Sobic005G030600--Sobic004G053100 Sobic004G248300 Sobic004G248300 Sobic005G030600--Sobic004G248300 Sobic010G254700 Sobic010G254700 Sobic005G030600--Sobic010G254700 Sobic003G186600 Sobic003G186600 Sobic005G030600--Sobic003G186600 Sobic005G100500 Sobic005G100500 Sobic005G030600--Sobic005G100500 Sobic002G306500--Sobic003G107000 Sobic003G156700 Sobic003G156700 Sobic002G306500--Sobic003G156700 Sobic002G306500--Sobic001G365266 Sobic002G306500--Sobic005G030600 Sobic002G180100 Sobic002G180100 Sobic002G306500--Sobic002G180100 Sobic002G306500--Sobic004G053100 Sobic001G032550 Sobic001G032550 Sobic002G306500--Sobic001G032550 Sobic002G306500--Sobic003G186600 Sobic009G166650 Sobic009G166650 Sobic002G306500--Sobic009G166650 Sobic009G118500 Sobic009G118500 Sobic003G107000--Sobic009G118500 Sobic001G221601 Sobic001G221601 Sobic003G107000--Sobic001G221601 Sobic003G107000--Sobic002G306500 Sobic003G107000--Sobic004G053100 Sobic003G107000--Sobic005G030600 Sobic010G213000 Sobic010G213000 Sobic003G107000--Sobic010G213000 Sobic006G276900 Sobic006G276900 Sobic003G107000--Sobic006G276900 Sobic007G067900 Sobic007G067900 Sobic003G107000--Sobic007G067900 Sobic002G403700 Sobic002G403700 Sobic003G107000--Sobic002G403700 Sobic001G365266--Sobic002G306500 Sobic001G365266--Sobic004G053100 Sobic001G365266--Sobic001G221601 Sobic001G365266--Sobic005G030600 Sobic001G365266--Sobic003G156700 Sobic001G365266--Sobic002G403700 Sobic001G095432 Sobic001G095432 Sobic001G365266--Sobic001G095432 Sobic001G365266--Sobic010G213000 Sobic001G365266--Sobic003G107000 Sobic006G003800 Sobic006G003800 Sobic009G103300--Sobic006G003800 Sobic009G115950 Sobic009G115950 Sobic009G103300--Sobic009G115950 Sobic009G103300--Sobic005G030600 Sobic005G186400 Sobic005G186400 Sobic009G103300--Sobic005G186400 Sobic010G118900 Sobic010G118900 Sobic009G103300--Sobic010G118900 Sobic006G097300 Sobic006G097300 Sobic009G103300--Sobic006G097300 Sobic007G150500 Sobic007G150500 Sobic009G103300--Sobic007G150500 Sobic001G015700 Sobic001G015700 Sobic009G103300--Sobic001G015700 Sobic001G171200 Sobic001G171200 Sobic009G103300--Sobic001G171200 Sobic004G053100--Sobic005G100500 Sobic004G053100--Sobic003G107000 Sobic004G053100--Sobic002G403700 Sobic004G053100--Sobic001G365266 Sobic004G053100--Sobic002G306500 Sobic004G053100--Sobic001G221601 Sobic003G409500 Sobic003G409500 Sobic004G053100--Sobic003G409500 Sobic004G053100--Sobic009G166650 Sobic004G312000 Sobic004G312000 Sobic004G053100--Sobic004G312000 Sobic001G022200 Sobic001G022200 Sobic004G248300--Sobic001G022200 Sobic004G248300--Sobic003G409500 Sobic004G248300--Sobic005G100500 Sobic006G108500 Sobic006G108500 Sobic004G248300--Sobic006G108500 Sobic002G294300 Sobic002G294300 Sobic004G248300--Sobic002G294300 Sobic001G088400 Sobic001G088400 Sobic004G248300--Sobic001G088400 Sobic005G110562 Sobic005G110562 Sobic004G248300--Sobic005G110562 Sobic004G064700 Sobic004G064700 Sobic004G248300--Sobic004G064700 Sobic003G298300 Sobic003G298300 Sobic004G248300--Sobic003G298300 Sobic001G105000 Sobic001G105000 Sobic010G254700--Sobic001G105000 Sobic003G043900 Sobic003G043900 Sobic010G254700--Sobic003G043900 Sobic010G254700--Sobic001G088400 Sobic004G243200 Sobic004G243200 Sobic010G254700--Sobic004G243200 Sobic010G254700--Sobic004G064700 Sobic004G203800 Sobic004G203800 Sobic010G254700--Sobic004G203800 Sobic001G304800 Sobic001G304800 Sobic010G254700--Sobic001G304800 Sobic001G109700 Sobic001G109700 Sobic010G254700--Sobic001G109700 Sobic010G158832 Sobic010G158832 Sobic010G254700--Sobic010G158832 Sobic003G186600--Sobic002G306500 Sobic007G072600 Sobic007G072600 Sobic003G186600--Sobic007G072600 Sobic001G043700 Sobic001G043700 Sobic003G186600--Sobic001G043700 Sobic009G236600 Sobic009G236600 Sobic003G186600--Sobic009G236600 Sobic008G147000 Sobic008G147000 Sobic003G186600--Sobic008G147000 Sobic005G033700 Sobic005G033700 Sobic003G186600--Sobic005G033700 Sobic001G201601 Sobic001G201601 Sobic003G186600--Sobic001G201601 Sobic003G186600--Sobic005G030600 Sobic010G180200 Sobic010G180200 Sobic003G186600--Sobic010G180200 Sobic005G100500--Sobic006G108500 Sobic005G100500--Sobic003G409500 Sobic007G107800 Sobic007G107800 Sobic005G100500--Sobic007G107800 Sobic010G267300 Sobic010G267300 Sobic005G100500--Sobic010G267300 Sobic001G395600 Sobic001G395600 Sobic005G100500--Sobic001G395600 Sobic009G218700 Sobic009G218700 Sobic005G100500--Sobic009G218700 Sobic004G015600 Sobic004G015600 Sobic005G100500--Sobic004G015600 Sobic007G113566 Sobic007G113566 Sobic005G100500--Sobic007G113566 Sobic004G157050 Sobic004G157050 Sobic005G100500--Sobic004G157050
Octagon: transcription factors


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