Gene annotation
Transcriptome id Sobic.002G306500.2
Synonym SNF7.2, VPS32
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt A0A1W0W6J6
Pfam PF03357
Panther DB PTHR22761 PTHR22761:SF20
NCBI CDD -
KEGG Orthology K12194; CHMP4, SNF7, charged multivesicular body protein 4
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT2G19830 : SNF7 family protein
RAP-DB (Rice) LOC_Os07g30830.2 : SNF7 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048090
Brachypodium PNT75059 , PNT75058 , KQK16174 , KQK16175
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G107000 receptor-like protein kinase precursor, putative, expressed -
2 Sobic.003G156700 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
3 Sobic.001G365266 - -
4 Sobic.005G030600 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
5 Sobic.002G180100 hypersensitive-induced response protein, putative, expressed -
6 Sobic.004G053100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.001G032550 - K15032: mTERF domain-containing protein, mitochondrial
8 Sobic.003G186600 OsFBX13 - F-box domain containing protein, expressed -
9 Sobic.009G166650 - -
10 Sobic.009G166400 MCM8 - Putative minichromosome maintenance MCM family subunit 8, expressed K10737: DNA helicase MCM8
11 Sobic.004G054600 porphobilinogen deaminase, chloroplast precursor, putative, expressed -
12 Sobic.007G067900 expressed protein -
13 Sobic.009G192700 ATBARD1/BARD1, putative, expressed K10683: BRCA1-associated RING domain protein 1
14 Sobic.001G221601 - -
15 Sobic.001G497800 DUF623 domain containing protein, expressed -
16 Sobic.004G012700 remorin family protein, putative, expressed -
17 Sobic.004G203800 steroid nuclear receptor, ligand-binding, putative, expressed -
18 Sobic.009G128400 peptide-N4-asparagine amidase A, putative, expressed -
19 Sobic.010G020900 OsFBX291 - F-box domain containing protein, expressed -
20 Sobic.010G249900 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic002G306500 Sobic002G306500 Sobic003G107000 Sobic003G107000 Sobic002G306500--Sobic003G107000 Sobic003G156700 Sobic003G156700 Sobic002G306500--Sobic003G156700 Sobic001G365266 Sobic001G365266 Sobic002G306500--Sobic001G365266 Sobic005G030600 Sobic005G030600 Sobic002G306500--Sobic005G030600 Sobic002G180100 Sobic002G180100 Sobic002G306500--Sobic002G180100 Sobic004G053100 Sobic004G053100 Sobic002G306500--Sobic004G053100 Sobic001G032550 Sobic001G032550 Sobic002G306500--Sobic001G032550 Sobic003G186600 Sobic003G186600 Sobic002G306500--Sobic003G186600 Sobic009G166650 Sobic009G166650 Sobic002G306500--Sobic009G166650 Sobic009G118500 Sobic009G118500 Sobic003G107000--Sobic009G118500 Sobic001G221601 Sobic001G221601 Sobic003G107000--Sobic001G221601 Sobic003G107000--Sobic002G306500 Sobic003G107000--Sobic004G053100 Sobic003G107000--Sobic005G030600 Sobic010G213000 Sobic010G213000 Sobic003G107000--Sobic010G213000 Sobic006G276900 Sobic006G276900 Sobic003G107000--Sobic006G276900 Sobic007G067900 Sobic007G067900 Sobic003G107000--Sobic007G067900 Sobic002G403700 Sobic002G403700 Sobic003G107000--Sobic002G403700 Sobic003G156700--Sobic002G306500 Sobic006G084201 Sobic006G084201 Sobic003G156700--Sobic006G084201 Sobic003G156700--Sobic001G365266 Sobic003G156700--Sobic002G180100 Sobic002G205000 Sobic002G205000 Sobic003G156700--Sobic002G205000 Sobic003G156700--Sobic007G067900 Sobic003G243100 Sobic003G243100 Sobic003G156700--Sobic003G243100 Sobic007G137101 Sobic007G137101 Sobic003G156700--Sobic007G137101 Sobic001G042700 Sobic001G042700 Sobic003G156700--Sobic001G042700 Sobic001G365266--Sobic002G306500 Sobic001G365266--Sobic004G053100 Sobic001G365266--Sobic001G221601 Sobic001G365266--Sobic005G030600 Sobic001G365266--Sobic003G156700 Sobic001G365266--Sobic002G403700 Sobic001G095432 Sobic001G095432 Sobic001G365266--Sobic001G095432 Sobic001G365266--Sobic010G213000 Sobic001G365266--Sobic003G107000 Sobic005G030600--Sobic002G306500 Sobic005G030600--Sobic003G107000 Sobic005G030600--Sobic001G365266 Sobic009G103300 Sobic009G103300 Sobic005G030600--Sobic009G103300 Sobic005G030600--Sobic004G053100 Sobic004G248300 Sobic004G248300 Sobic005G030600--Sobic004G248300 Sobic010G254700 Sobic010G254700 Sobic005G030600--Sobic010G254700 Sobic005G030600--Sobic003G186600 Sobic005G100500 Sobic005G100500 Sobic005G030600--Sobic005G100500 Sobic003G243000 Sobic003G243000 Sobic002G180100--Sobic003G243000 Sobic002G180100--Sobic002G306500 Sobic004G299200 Sobic004G299200 Sobic002G180100--Sobic004G299200 Sobic007G192900 Sobic007G192900 Sobic002G180100--Sobic007G192900 Sobic001G497800 Sobic001G497800 Sobic002G180100--Sobic001G497800 Sobic003G092000 Sobic003G092000 Sobic002G180100--Sobic003G092000 Sobic005G141200 Sobic005G141200 Sobic002G180100--Sobic005G141200 Sobic002G180100--Sobic003G156700 Sobic009G211300 Sobic009G211300 Sobic002G180100--Sobic009G211300 Sobic004G053100--Sobic005G100500 Sobic004G053100--Sobic003G107000 Sobic004G053100--Sobic002G403700 Sobic004G053100--Sobic001G365266 Sobic004G053100--Sobic002G306500 Sobic004G053100--Sobic001G221601 Sobic003G409500 Sobic003G409500 Sobic004G053100--Sobic003G409500 Sobic004G053100--Sobic009G166650 Sobic004G312000 Sobic004G312000 Sobic004G053100--Sobic004G312000 Sobic001G032550--Sobic002G306500 Sobic003G124000 Sobic003G124000 Sobic001G032550--Sobic003G124000 Sobic002G181400 Sobic002G181400 Sobic001G032550--Sobic002G181400 Sobic009G166400 Sobic009G166400 Sobic001G032550--Sobic009G166400 Sobic001G032550--Sobic003G107000 Sobic001G032550--Sobic009G166650 Sobic006G234500 Sobic006G234500 Sobic001G032550--Sobic006G234500 Sobic009G241966 Sobic009G241966 Sobic001G032550--Sobic009G241966 Sobic003G202700 Sobic003G202700 Sobic001G032550--Sobic003G202700 Sobic003G186600--Sobic002G306500 Sobic007G072600 Sobic007G072600 Sobic003G186600--Sobic007G072600 Sobic001G043700 Sobic001G043700 Sobic003G186600--Sobic001G043700 Sobic009G236600 Sobic009G236600 Sobic003G186600--Sobic009G236600 Sobic008G147000 Sobic008G147000 Sobic003G186600--Sobic008G147000 Sobic005G033700 Sobic005G033700 Sobic003G186600--Sobic005G033700 Sobic001G201601 Sobic001G201601 Sobic003G186600--Sobic001G201601 Sobic003G186600--Sobic005G030600 Sobic010G180200 Sobic010G180200 Sobic003G186600--Sobic010G180200 Sobic009G166650--Sobic009G166400 Sobic002G095800 Sobic002G095800 Sobic009G166650--Sobic002G095800 Sobic002G305900 Sobic002G305900 Sobic009G166650--Sobic002G305900 Sobic001G455300 Sobic001G455300 Sobic009G166650--Sobic001G455300 Sobic002G390700 Sobic002G390700 Sobic009G166650--Sobic002G390700 Sobic009G166650--Sobic001G221601 Sobic007G102600 Sobic007G102600 Sobic009G166650--Sobic007G102600 Sobic001G394000 Sobic001G394000 Sobic009G166650--Sobic001G394000 Sobic004G073800 Sobic004G073800 Sobic009G166650--Sobic004G073800
Octagon: transcription factors


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