Gene annotation
Transcriptome id Sobic.004G053100.1
Synonym Sb04g004500
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1Z5RL11
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF334
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G20770 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os02g07050.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a019052
Brachypodium PNT75833 , PNT75832 , PNT75831 , KQJ93502 , KQK18097
Barley HORVU6Hr1G027560.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G100500 RNA polymerase subunit, putative, expressed K03020: RPC19, DNA-directed RNA polymerases I and III subunit RPAC2
2 Sobic.003G107000 receptor-like protein kinase precursor, putative, expressed -
3 Sobic.002G403700 condensin complex subunit 1, putative, expressed K06677: YCS4, CNAP1, condensin complex subunit 1
4 Sobic.001G365266 - -
5 Sobic.002G306500 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
6 Sobic.001G221601 - -
7 Sobic.003G409500 - -
8 Sobic.009G166650 - -
9 Sobic.004G312000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
10 Sobic.003G398500 Uncharacterized ACR, COG1565 containing protein, putative, expressed -
11 Sobic.009G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.001G332933 - -
13 Sobic.010G249900 pentatricopeptide, putative, expressed -
14 Sobic.004G015600 - -
15 Sobic.004G208800 expressed protein -
16 Sobic.005G030600 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
17 Sobic.007G107800 expressed protein -
18 Sobic.004G054600 porphobilinogen deaminase, chloroplast precursor, putative, expressed -
19 Sobic.006G108500 dynein light chain type 1 domain containing protein, expressed -
20 Sobic.004G007133 - -


Gene co-expression network
sample Sobic004G053100 Sobic004G053100 Sobic005G100500 Sobic005G100500 Sobic004G053100--Sobic005G100500 Sobic003G107000 Sobic003G107000 Sobic004G053100--Sobic003G107000 Sobic002G403700 Sobic002G403700 Sobic004G053100--Sobic002G403700 Sobic001G365266 Sobic001G365266 Sobic004G053100--Sobic001G365266 Sobic002G306500 Sobic002G306500 Sobic004G053100--Sobic002G306500 Sobic001G221601 Sobic001G221601 Sobic004G053100--Sobic001G221601 Sobic003G409500 Sobic003G409500 Sobic004G053100--Sobic003G409500 Sobic009G166650 Sobic009G166650 Sobic004G053100--Sobic009G166650 Sobic004G312000 Sobic004G312000 Sobic004G053100--Sobic004G312000 Sobic006G108500 Sobic006G108500 Sobic005G100500--Sobic006G108500 Sobic005G100500--Sobic003G409500 Sobic007G107800 Sobic007G107800 Sobic005G100500--Sobic007G107800 Sobic010G267300 Sobic010G267300 Sobic005G100500--Sobic010G267300 Sobic001G395600 Sobic001G395600 Sobic005G100500--Sobic001G395600 Sobic009G218700 Sobic009G218700 Sobic005G100500--Sobic009G218700 Sobic004G015600 Sobic004G015600 Sobic005G100500--Sobic004G015600 Sobic007G113566 Sobic007G113566 Sobic005G100500--Sobic007G113566 Sobic004G157050 Sobic004G157050 Sobic005G100500--Sobic004G157050 Sobic009G118500 Sobic009G118500 Sobic003G107000--Sobic009G118500 Sobic003G107000--Sobic001G221601 Sobic003G107000--Sobic002G306500 Sobic003G107000--Sobic004G053100 Sobic005G030600 Sobic005G030600 Sobic003G107000--Sobic005G030600 Sobic010G213000 Sobic010G213000 Sobic003G107000--Sobic010G213000 Sobic006G276900 Sobic006G276900 Sobic003G107000--Sobic006G276900 Sobic007G067900 Sobic007G067900 Sobic003G107000--Sobic007G067900 Sobic003G107000--Sobic002G403700 Sobic003G055400 Sobic003G055400 Sobic002G403700--Sobic003G055400 Sobic002G104600 Sobic002G104600 Sobic002G403700--Sobic002G104600 Sobic006G063800 Sobic006G063800 Sobic002G403700--Sobic006G063800 Sobic002G403700--Sobic003G409500 Sobic002G403700--Sobic006G108500 Sobic002G403700--Sobic005G100500 Sobic001G454700 Sobic001G454700 Sobic002G403700--Sobic001G454700 Sobic001G105000 Sobic001G105000 Sobic002G403700--Sobic001G105000 Sobic001G518050 Sobic001G518050 Sobic002G403700--Sobic001G518050 Sobic001G365266--Sobic002G306500 Sobic001G365266--Sobic004G053100 Sobic001G365266--Sobic001G221601 Sobic001G365266--Sobic005G030600 Sobic003G156700 Sobic003G156700 Sobic001G365266--Sobic003G156700 Sobic001G365266--Sobic002G403700 Sobic001G095432 Sobic001G095432 Sobic001G365266--Sobic001G095432 Sobic001G365266--Sobic010G213000 Sobic001G365266--Sobic003G107000 Sobic002G306500--Sobic003G107000 Sobic002G306500--Sobic003G156700 Sobic002G306500--Sobic001G365266 Sobic002G306500--Sobic005G030600 Sobic002G180100 Sobic002G180100 Sobic002G306500--Sobic002G180100 Sobic002G306500--Sobic004G053100 Sobic001G032550 Sobic001G032550 Sobic002G306500--Sobic001G032550 Sobic003G186600 Sobic003G186600 Sobic002G306500--Sobic003G186600 Sobic002G306500--Sobic009G166650 Sobic004G312400 Sobic004G312400 Sobic001G221601--Sobic004G312400 Sobic002G390700 Sobic002G390700 Sobic001G221601--Sobic002G390700 Sobic004G064700 Sobic004G064700 Sobic001G221601--Sobic004G064700 Sobic001G221601--Sobic009G166650 Sobic004G073800 Sobic004G073800 Sobic001G221601--Sobic004G073800 Sobic001G221601--Sobic003G107000 Sobic001G221601--Sobic010G213000 Sobic001G088400 Sobic001G088400 Sobic001G221601--Sobic001G088400 Sobic001G088000 Sobic001G088000 Sobic001G221601--Sobic001G088000 Sobic003G409500--Sobic001G395600 Sobic002G157050 Sobic002G157050 Sobic003G409500--Sobic002G157050 Sobic003G409500--Sobic005G100500 Sobic003G409500--Sobic010G267300 Sobic003G409500--Sobic006G108500 Sobic001G171700 Sobic001G171700 Sobic003G409500--Sobic001G171700 Sobic001G465600 Sobic001G465600 Sobic003G409500--Sobic001G465600 Sobic003G409500--Sobic004G157050 Sobic010G002301 Sobic010G002301 Sobic003G409500--Sobic010G002301 Sobic009G166400 Sobic009G166400 Sobic009G166650--Sobic009G166400 Sobic002G095800 Sobic002G095800 Sobic009G166650--Sobic002G095800 Sobic002G305900 Sobic002G305900 Sobic009G166650--Sobic002G305900 Sobic001G455300 Sobic001G455300 Sobic009G166650--Sobic001G455300 Sobic009G166650--Sobic002G390700 Sobic009G166650--Sobic001G221601 Sobic007G102600 Sobic007G102600 Sobic009G166650--Sobic007G102600 Sobic001G394000 Sobic001G394000 Sobic009G166650--Sobic001G394000 Sobic009G166650--Sobic004G073800 Sobic003G047400 Sobic003G047400 Sobic004G312000--Sobic003G047400 Sobic001G444200 Sobic001G444200 Sobic004G312000--Sobic001G444200 Sobic004G312000--Sobic007G107800 Sobic001G159500 Sobic001G159500 Sobic004G312000--Sobic001G159500 Sobic004G312000--Sobic005G100500 Sobic001G332933 Sobic001G332933 Sobic004G312000--Sobic001G332933 Sobic002G257600 Sobic002G257600 Sobic004G312000--Sobic002G257600 Sobic004G145550 Sobic004G145550 Sobic004G312000--Sobic004G145550 Sobic010G148100 Sobic010G148100 Sobic004G312000--Sobic010G148100
Octagon: transcription factors


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