Gene annotation
Transcriptome id Sobic.003G442800.1
Synonym Sb03g047260
Functional annotation PPR repeat containing protein, expressed
UniProt C5XJD2
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF795
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48250 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g73950.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a025838 , Zm00025a039051
Brachypodium -
Barley -
Wheat TraesCS3D02G530500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G411500 expressed protein -
2 Sobic.001G016300 pentatricopeptide, putative, expressed -
3 Sobic.007G118400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
4 Sobic.005G030600 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
5 Sobic.007G194200 expressed protein -
6 Sobic.003G055400 expressed protein -
7 Sobic.001G450400 cyclin, putative, expressed -
8 Sobic.005G100500 RNA polymerase subunit, putative, expressed K03020: RPC19, DNA-directed RNA polymerases I and III subunit RPAC2
9 Sobic.001G102200 expressed protein -
10 Sobic.007G130500 cation efflux family protein, putative, expressed K14692: SLC30A5_7, ZNT5_7, MTP, solute carrier family 30 (zinc transporter), member 5/7
11 Sobic.006G233800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Transferase family protein (At)(PubMedID : 27208977)@transferase family protein, putative, expressed -
12 Sobic.009G199800 cyclic phosphodiesterase, putative, expressed -
13 Sobic.003G339800 expressed protein -
14 Sobic.001G350400 steroid binding protein, putative, expressed K13484: 5-hydroxyisourate hydrolase / 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
15 Sobic.003G337200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat-containing protein, putative, expressed -
16 Sobic.002G025000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@receptor like protein kinase, putative, expressed -
17 Sobic.009G213950 - K04799: FEN1, flap endonuclease-1
18 Sobic.009G111800 OsFBO5 - F-box and other domain containing protein, expressed -
19 Sobic.004G278500 GAMM1 protein-like, putative, expressed -
20 Sobic.002G397700 - -


Gene co-expression network
sample Sobic003G442800 Sobic003G442800 Sobic001G411500 Sobic001G411500 Sobic003G442800--Sobic001G411500 Sobic001G016300 Sobic001G016300 Sobic003G442800--Sobic001G016300 Sobic007G118400 Sobic007G118400 Sobic003G442800--Sobic007G118400 Sobic005G030600 Sobic005G030600 Sobic003G442800--Sobic005G030600 Sobic007G194200 Sobic007G194200 Sobic003G442800--Sobic007G194200 Sobic003G055400 Sobic003G055400 Sobic003G442800--Sobic003G055400 Sobic001G450400 Sobic001G450400 Sobic003G442800--Sobic001G450400 Sobic005G100500 Sobic005G100500 Sobic003G442800--Sobic005G100500 Sobic001G102200 Sobic001G102200 Sobic003G442800--Sobic001G102200 Sobic007G107800 Sobic007G107800 Sobic001G411500--Sobic007G107800 Sobic004G268600 Sobic004G268600 Sobic001G411500--Sobic004G268600 Sobic004G104200 Sobic004G104200 Sobic001G411500--Sobic004G104200 Sobic004G208301 Sobic004G208301 Sobic001G411500--Sobic004G208301 Sobic003G119750 Sobic003G119750 Sobic001G411500--Sobic003G119750 Sobic001G128000 Sobic001G128000 Sobic001G411500--Sobic001G128000 Sobic009G192200 Sobic009G192200 Sobic001G411500--Sobic009G192200 Sobic007G085900 Sobic007G085900 Sobic001G411500--Sobic007G085900 Sobic003G337200 Sobic003G337200 Sobic001G411500--Sobic003G337200 Sobic010G133225 Sobic010G133225 Sobic001G016300--Sobic010G133225 Sobic001G016300--Sobic003G337200 Sobic002G104600 Sobic002G104600 Sobic001G016300--Sobic002G104600 Sobic010G107901 Sobic010G107901 Sobic001G016300--Sobic010G107901 Sobic002G397700 Sobic002G397700 Sobic001G016300--Sobic002G397700 Sobic004G234766 Sobic004G234766 Sobic001G016300--Sobic004G234766 Sobic003G255850 Sobic003G255850 Sobic001G016300--Sobic003G255850 Sobic003G172450 Sobic003G172450 Sobic001G016300--Sobic003G172450 Sobic002G322101 Sobic002G322101 Sobic001G016300--Sobic002G322101 Sobic007G118400--Sobic004G208301 Sobic007G123700 Sobic007G123700 Sobic007G118400--Sobic007G123700 Sobic007G118400--Sobic003G337200 Sobic007G118400--Sobic003G172450 Sobic006G139200 Sobic006G139200 Sobic007G118400--Sobic006G139200 Sobic005G068300 Sobic005G068300 Sobic007G118400--Sobic005G068300 Sobic007G118400--Sobic010G107901 Sobic007G118400--Sobic002G397700 Sobic007G118400--Sobic004G268600 Sobic002G306500 Sobic002G306500 Sobic005G030600--Sobic002G306500 Sobic003G107000 Sobic003G107000 Sobic005G030600--Sobic003G107000 Sobic001G365266 Sobic001G365266 Sobic005G030600--Sobic001G365266 Sobic009G103300 Sobic009G103300 Sobic005G030600--Sobic009G103300 Sobic004G053100 Sobic004G053100 Sobic005G030600--Sobic004G053100 Sobic004G248300 Sobic004G248300 Sobic005G030600--Sobic004G248300 Sobic010G254700 Sobic010G254700 Sobic005G030600--Sobic010G254700 Sobic003G186600 Sobic003G186600 Sobic005G030600--Sobic003G186600 Sobic005G030600--Sobic005G100500 Sobic007G194200--Sobic005G100500 Sobic006G108500 Sobic006G108500 Sobic007G194200--Sobic006G108500 Sobic007G194200--Sobic007G107800 Sobic010G224100 Sobic010G224100 Sobic007G194200--Sobic010G224100 Sobic004G353650 Sobic004G353650 Sobic007G194200--Sobic004G353650 Sobic006G249900 Sobic006G249900 Sobic007G194200--Sobic006G249900 Sobic007G194200--Sobic004G268600 Sobic007G194200--Sobic001G128000 Sobic006G109200 Sobic006G109200 Sobic007G194200--Sobic006G109200 Sobic003G055400--Sobic006G108500 Sobic003G249500 Sobic003G249500 Sobic003G055400--Sobic003G249500 Sobic003G055400--Sobic002G104600 Sobic002G403700 Sobic002G403700 Sobic003G055400--Sobic002G403700 Sobic008G033800 Sobic008G033800 Sobic003G055400--Sobic008G033800 Sobic001G293900 Sobic001G293900 Sobic003G055400--Sobic001G293900 Sobic003G055400--Sobic003G119750 Sobic001G454700 Sobic001G454700 Sobic003G055400--Sobic001G454700 Sobic003G055400--Sobic004G104200 Sobic003G003300 Sobic003G003300 Sobic001G450400--Sobic003G003300 Sobic005G097500 Sobic005G097500 Sobic001G450400--Sobic005G097500 Sobic006G202900 Sobic006G202900 Sobic001G450400--Sobic006G202900 Sobic008G029000 Sobic008G029000 Sobic001G450400--Sobic008G029000 Sobic003G112500 Sobic003G112500 Sobic001G450400--Sobic003G112500 Sobic002G385601 Sobic002G385601 Sobic001G450400--Sobic002G385601 Sobic005G187800 Sobic005G187800 Sobic001G450400--Sobic005G187800 Sobic010G193100 Sobic010G193100 Sobic001G450400--Sobic010G193100 Sobic001G319000 Sobic001G319000 Sobic001G450400--Sobic001G319000 Sobic005G100500--Sobic006G108500 Sobic003G409500 Sobic003G409500 Sobic005G100500--Sobic003G409500 Sobic005G100500--Sobic007G107800 Sobic010G267300 Sobic010G267300 Sobic005G100500--Sobic010G267300 Sobic001G395600 Sobic001G395600 Sobic005G100500--Sobic001G395600 Sobic009G218700 Sobic009G218700 Sobic005G100500--Sobic009G218700 Sobic004G015600 Sobic004G015600 Sobic005G100500--Sobic004G015600 Sobic007G113566 Sobic007G113566 Sobic005G100500--Sobic007G113566 Sobic004G157050 Sobic004G157050 Sobic005G100500--Sobic004G157050 Sobic007G130500 Sobic007G130500 Sobic001G102200--Sobic007G130500 Sobic006G004200 Sobic006G004200 Sobic001G102200--Sobic006G004200 Sobic001G102200--Sobic001G411500 Sobic010G026850 Sobic010G026850 Sobic001G102200--Sobic010G026850 Sobic005G028500 Sobic005G028500 Sobic001G102200--Sobic005G028500 Sobic006G206600 Sobic006G206600 Sobic001G102200--Sobic006G206600 Sobic003G271100 Sobic003G271100 Sobic001G102200--Sobic003G271100 Sobic001G102200--Sobic005G100500 Sobic002G191900 Sobic002G191900 Sobic001G102200--Sobic002G191900
Octagon: transcription factors


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