Gene annotation
Transcriptome id Sobic.004G278500.1
Synonym Sb04g031530
Functional annotation GAMM1 protein-like, putative, expressed
UniProt C5Y0V5
Pfam PF03690
Panther DB PTHR11215 PTHR11215:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G41970 : Metal-dependent protein hydrolase
RAP-DB (Rice) LOC_Os02g46150.1 : GAMM1 protein-like, putative, expressed
MaizeGDB (Corn) Zm00025a032353
Brachypodium KQK00816
Barley HORVU0Hr1G027680.1 , HORVU6Hr1G066550.1
Wheat TraesCS6A02G261700 , TraesCS6B02G289000 , TraesCS6D02G242400
Populus -


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cDNA sequences
Sobic.004G278500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
2 Sobic.006G017100 ribosomal L18p/L5e family protein, putative, expressed -
3 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
4 Sobic.009G104100 peptidase, M24 family protein, putative, expressed -
5 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
6 Sobic.008G084600 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
7 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
8 Sobic.006G226500 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
9 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
10 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
11 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
12 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
13 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
14 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
15 Sobic.006G035900 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
16 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
17 Sobic.001G432300 imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed K01663: imidazole glycerol-phosphate synthase
18 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -
19 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
20 Sobic.009G258500 notchless protein, putative, expressed K14855: RSA4, ribosome assembly protein 4


Gene co-expression network
sample Sobic004G278500 Sobic004G278500 Sobic010G032700 Sobic010G032700 Sobic004G278500--Sobic010G032700 Sobic006G017100 Sobic006G017100 Sobic004G278500--Sobic006G017100 Sobic002G045100 Sobic002G045100 Sobic004G278500--Sobic002G045100 Sobic009G104100 Sobic009G104100 Sobic004G278500--Sobic009G104100 Sobic004G326600 Sobic004G326600 Sobic004G278500--Sobic004G326600 Sobic008G084600 Sobic008G084600 Sobic004G278500--Sobic008G084600 Sobic003G205400 Sobic003G205400 Sobic004G278500--Sobic003G205400 Sobic006G226500 Sobic006G226500 Sobic004G278500--Sobic006G226500 Sobic001G371100 Sobic001G371100 Sobic004G278500--Sobic001G371100 Sobic010G032700--Sobic001G371100 Sobic009G119700 Sobic009G119700 Sobic010G032700--Sobic009G119700 Sobic002G280700 Sobic002G280700 Sobic010G032700--Sobic002G280700 Sobic009G088200 Sobic009G088200 Sobic010G032700--Sobic009G088200 Sobic004G343600 Sobic004G343600 Sobic010G032700--Sobic004G343600 Sobic002G054000 Sobic002G054000 Sobic010G032700--Sobic002G054000 Sobic002G319200 Sobic002G319200 Sobic010G032700--Sobic002G319200 Sobic010G032700--Sobic002G045100 Sobic001G228200 Sobic001G228200 Sobic010G032700--Sobic001G228200 Sobic004G213200 Sobic004G213200 Sobic006G017100--Sobic004G213200 Sobic004G138800 Sobic004G138800 Sobic006G017100--Sobic004G138800 Sobic002G255100 Sobic002G255100 Sobic006G017100--Sobic002G255100 Sobic001G481700 Sobic001G481700 Sobic006G017100--Sobic001G481700 Sobic003G160900 Sobic003G160900 Sobic006G017100--Sobic003G160900 Sobic009G212300 Sobic009G212300 Sobic006G017100--Sobic009G212300 Sobic001G505500 Sobic001G505500 Sobic006G017100--Sobic001G505500 Sobic003G308000 Sobic003G308000 Sobic006G017100--Sobic003G308000 Sobic010G038700 Sobic010G038700 Sobic006G017100--Sobic010G038700 Sobic007G143000 Sobic007G143000 Sobic002G045100--Sobic007G143000 Sobic005G164700 Sobic005G164700 Sobic002G045100--Sobic005G164700 Sobic009G012700 Sobic009G012700 Sobic002G045100--Sobic009G012700 Sobic002G045100--Sobic002G319200 Sobic002G045100--Sobic003G160900 Sobic007G034400 Sobic007G034400 Sobic002G045100--Sobic007G034400 Sobic004G002350 Sobic004G002350 Sobic002G045100--Sobic004G002350 Sobic010G018000 Sobic010G018000 Sobic002G045100--Sobic010G018000 Sobic002G045100--Sobic001G371100 Sobic002G101000 Sobic002G101000 Sobic009G104100--Sobic002G101000 Sobic009G104100--Sobic001G481700 Sobic004G224900 Sobic004G224900 Sobic009G104100--Sobic004G224900 Sobic005G050500 Sobic005G050500 Sobic009G104100--Sobic005G050500 Sobic007G220900 Sobic007G220900 Sobic009G104100--Sobic007G220900 Sobic003G330500 Sobic003G330500 Sobic009G104100--Sobic003G330500 Sobic008G132400 Sobic008G132400 Sobic009G104100--Sobic008G132400 Sobic001G057300 Sobic001G057300 Sobic009G104100--Sobic001G057300 Sobic007G076300 Sobic007G076300 Sobic009G104100--Sobic007G076300 Sobic004G047200 Sobic004G047200 Sobic004G326600--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic004G326600--Sobic002G014400 Sobic002G423500 Sobic002G423500 Sobic004G326600--Sobic002G423500 Sobic001G091900 Sobic001G091900 Sobic004G326600--Sobic001G091900 Sobic004G215700 Sobic004G215700 Sobic004G326600--Sobic004G215700 Sobic002G341800 Sobic002G341800 Sobic004G326600--Sobic002G341800 Sobic005G163700 Sobic005G163700 Sobic004G326600--Sobic005G163700 Sobic002G143000 Sobic002G143000 Sobic004G326600--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic004G326600--Sobic001G458700 Sobic010G008800 Sobic010G008800 Sobic008G084600--Sobic010G008800 Sobic003G428200 Sobic003G428200 Sobic008G084600--Sobic003G428200 Sobic008G084600--Sobic009G104100 Sobic007G176200 Sobic007G176200 Sobic008G084600--Sobic007G176200 Sobic001G010700 Sobic001G010700 Sobic008G084600--Sobic001G010700 Sobic008G084600--Sobic006G017100 Sobic002G180300 Sobic002G180300 Sobic008G084600--Sobic002G180300 Sobic008G084600--Sobic003G330500 Sobic008G084600--Sobic007G076300 Sobic002G402500 Sobic002G402500 Sobic003G205400--Sobic002G402500 Sobic001G214900 Sobic001G214900 Sobic003G205400--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic003G205400--Sobic001G522000 Sobic003G388900 Sobic003G388900 Sobic003G205400--Sobic003G388900 Sobic002G367800 Sobic002G367800 Sobic003G205400--Sobic002G367800 Sobic010G277000 Sobic010G277000 Sobic003G205400--Sobic010G277000 Sobic010G134100 Sobic010G134100 Sobic003G205400--Sobic010G134100 Sobic001G413100 Sobic001G413100 Sobic003G205400--Sobic001G413100 Sobic003G205400--Sobic002G423500 Sobic010G100000 Sobic010G100000 Sobic006G226500--Sobic010G100000 Sobic006G226500--Sobic001G505500 Sobic001G018800 Sobic001G018800 Sobic006G226500--Sobic001G018800 Sobic003G280700 Sobic003G280700 Sobic006G226500--Sobic003G280700 Sobic002G331300 Sobic002G331300 Sobic006G226500--Sobic002G331300 Sobic009G144300 Sobic009G144300 Sobic006G226500--Sobic009G144300 Sobic006G226500--Sobic005G050500 Sobic001G334300 Sobic001G334300 Sobic006G226500--Sobic001G334300 Sobic005G091700 Sobic005G091700 Sobic006G226500--Sobic005G091700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G371100--Sobic001G228200
Octagon: transcription factors


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