Gene annotation
Transcriptome id Sobic.009G199800.1
Synonym Sb09g025750
Functional annotation cyclic phosphodiesterase, putative, expressed
UniProt C5Z196 , A0A097PLQ5
Pfam PF07823
Panther DB PTHR28141 PTHR28141:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004112; cyclic-nucleotide phosphodiesterase activity


Orthologs (automatic annotation)
TAIR AT4G18930 : RNA ligase/cyclic nucleotide phosphodiesterase family protein
RAP-DB (Rice) LOC_Os05g44170.1 : cyclic phosphodiesterase, putative, expressed
MaizeGDB (Corn) Zm00025a044241 , Zm00025a037952
Brachypodium -
Barley HORVU1Hr1G076420.2 , HORVU3Hr1G108790.38 , HORVU3Hr1G108790.39 , HORVU3Hr1G108790.15 , HORVU3Hr1G108790.32 , HORVU3Hr1G108790.19 , HORVU3Hr1G108790.31 , HORVU3Hr1G108790.36 , HORVU3Hr1G108790.37 , HORVU3Hr1G108790.35 , HORVU1Hr1G076420.4 , HORVU7Hr1G035190.3 , HORVU7Hr1G035190.2 , HORVU7Hr1G035190.1 , HORVU1Hr1G076420.1 , HORVU3Hr1G108790.6 , HORVU3Hr1G108790.7 , HORVU3Hr1G108790.4 , HORVU3Hr1G108790.5 , HORVU3Hr1G108790.21 , HORVU3Hr1G108790.20 , HORVU3Hr1G108790.13
Wheat TraesCS1D02G340700 , TraesCS1A02G338500 , TraesCS7B02G072600 , TraesCS1B02G351000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G044450 - -
2 Sobic.003G172450 - -
3 Sobic.006G139200 zinc knuckle family protein, expressed -
4 Sobic.002G040550 - -
5 Sobic.010G107901 - K13104: ZNF830, zinc finger protein 830
6 Sobic.002G397700 - -
7 Sobic.004G234766 - -
8 Sobic.007G123700 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.008G024900 expressed protein -
10 Sobic.006G093550 - -
11 Sobic.001G029500 GDP-mannose transporter, putative, expressed K15356: VRG4, GDP-mannose transporter
12 Sobic.001G249900 - -
13 Sobic.002G025000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@receptor like protein kinase, putative, expressed -
14 Sobic.009G087480 - -
15 Sobic.010G133225 - -
16 Sobic.002G322101 - -
17 Sobic.007G149750 - -
18 Sobic.002G180732 - -
19 Sobic.002G390200 pentatricopeptide, putative, expressed -
20 Sobic.003G337200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat-containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G199800 Sobic009G199800 Sobic008G044450 Sobic008G044450 Sobic009G199800--Sobic008G044450 Sobic003G172450 Sobic003G172450 Sobic009G199800--Sobic003G172450 Sobic006G139200 Sobic006G139200 Sobic009G199800--Sobic006G139200 Sobic002G040550 Sobic002G040550 Sobic009G199800--Sobic002G040550 Sobic010G107901 Sobic010G107901 Sobic009G199800--Sobic010G107901 Sobic002G397700 Sobic002G397700 Sobic009G199800--Sobic002G397700 Sobic004G234766 Sobic004G234766 Sobic009G199800--Sobic004G234766 Sobic007G123700 Sobic007G123700 Sobic009G199800--Sobic007G123700 Sobic008G024900 Sobic008G024900 Sobic009G199800--Sobic008G024900 Sobic008G044450--Sobic009G199800 Sobic003G339300 Sobic003G339300 Sobic008G044450--Sobic003G339300 Sobic008G044450--Sobic007G123700 Sobic001G029500 Sobic001G029500 Sobic008G044450--Sobic001G029500 Sobic003G050100 Sobic003G050100 Sobic008G044450--Sobic003G050100 Sobic004G282933 Sobic004G282933 Sobic008G044450--Sobic004G282933 Sobic001G054050 Sobic001G054050 Sobic008G044450--Sobic001G054050 Sobic008G044450--Sobic006G139200 Sobic008G044450--Sobic008G024900 Sobic003G172450--Sobic010G107901 Sobic003G172450--Sobic006G139200 Sobic003G172450--Sobic002G397700 Sobic003G172450--Sobic002G040550 Sobic003G172450--Sobic004G234766 Sobic002G390200 Sobic002G390200 Sobic003G172450--Sobic002G390200 Sobic006G093550 Sobic006G093550 Sobic003G172450--Sobic006G093550 Sobic003G172450--Sobic008G024900 Sobic010G225400 Sobic010G225400 Sobic003G172450--Sobic010G225400 Sobic006G139200--Sobic002G040550 Sobic006G139200--Sobic003G172450 Sobic006G139200--Sobic002G390200 Sobic002G180732 Sobic002G180732 Sobic006G139200--Sobic002G180732 Sobic009G087480 Sobic009G087480 Sobic006G139200--Sobic009G087480 Sobic006G139200--Sobic010G107901 Sobic006G139200--Sobic002G397700 Sobic003G160300 Sobic003G160300 Sobic006G139200--Sobic003G160300 Sobic006G139200--Sobic004G234766 Sobic002G040550--Sobic006G139200 Sobic002G040550--Sobic003G172450 Sobic002G040550--Sobic002G390200 Sobic002G040550--Sobic002G180732 Sobic002G040550--Sobic009G087480 Sobic002G040550--Sobic010G107901 Sobic002G040550--Sobic002G397700 Sobic002G040550--Sobic003G160300 Sobic002G040550--Sobic004G234766 Sobic010G107901--Sobic002G397700 Sobic010G107901--Sobic004G234766 Sobic010G107901--Sobic003G172450 Sobic010G107901--Sobic006G093550 Sobic002G322101 Sobic002G322101 Sobic010G107901--Sobic002G322101 Sobic010G133225 Sobic010G133225 Sobic010G107901--Sobic010G133225 Sobic010G107901--Sobic008G024900 Sobic003G337200 Sobic003G337200 Sobic010G107901--Sobic003G337200 Sobic001G249900 Sobic001G249900 Sobic010G107901--Sobic001G249900 Sobic002G397700--Sobic010G107901 Sobic002G397700--Sobic004G234766 Sobic002G397700--Sobic006G093550 Sobic002G397700--Sobic003G172450 Sobic002G397700--Sobic002G322101 Sobic002G397700--Sobic010G133225 Sobic007G149750 Sobic007G149750 Sobic002G397700--Sobic007G149750 Sobic002G397700--Sobic001G249900 Sobic002G397700--Sobic003G337200 Sobic004G234766--Sobic010G107901 Sobic004G234766--Sobic002G397700 Sobic004G234766--Sobic006G093550 Sobic004G234766--Sobic002G322101 Sobic004G234766--Sobic003G172450 Sobic004G234766--Sobic007G149750 Sobic004G234766--Sobic001G249900 Sobic004G234766--Sobic010G133225 Sobic004G234766--Sobic003G337200 Sobic007G123700--Sobic006G139200 Sobic007G123700--Sobic002G040550 Sobic007G123700--Sobic009G087480 Sobic007G123700--Sobic003G172450 Sobic007G123700--Sobic002G390200 Sobic007G123700--Sobic008G024900 Sobic007G123700--Sobic002G180732 Sobic007G123700--Sobic004G282933 Sobic007G123700--Sobic010G107901 Sobic008G024900--Sobic006G093550 Sobic008G024900--Sobic004G234766 Sobic008G024900--Sobic010G107901 Sobic008G024900--Sobic002G397700 Sobic008G024900--Sobic003G172450 Sobic008G024900--Sobic001G054050 Sobic008G024900--Sobic002G322101 Sobic008G024900--Sobic001G249900 Sobic005G167100 Sobic005G167100 Sobic008G024900--Sobic005G167100
Octagon: transcription factors


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