Gene annotation
Transcriptome id Sobic.009G213950.1
Synonym -
Functional annotation -
UniProt C5YUK3 , A0A1Z5R4R7
Pfam PF00752 PF00867
Panther DB PTHR11081 PTHR11081:SF30
NCBI CDD KOG2519; 5'-3' exonuclease
KEGG Orthology K04799; FEN1, flap endonuclease-1
Gene Ontology GO:0006281; DNA repair GO:0004518nuclease activity


Orthologs (automatic annotation)
TAIR AT5G26680 : 5\'-3\' exonuclease family protein
RAP-DB (Rice) LOC_Os05g46270.1 : FEN1A - Putative flap endonuclease protein, expressed
MaizeGDB (Corn) Zm00025a044402
Brachypodium KQK05142
Barley HORVU1Hr1G079900.2 , HORVU1Hr1G079900.3 , HORVU1Hr1G079900.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G032900 wee1-like protein kinase, putative, expressed K06632: wee1-like protein kinase
2 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
3 Sobic.001G530600 cyclin-dependent kinase A-1, putative, expressed K02206: cyclin-dependent kinase 2
4 Sobic.001G155500 transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
5 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
6 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
7 Sobic.001G532800 RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
8 Sobic.002G246900 expressed protein -
9 Sobic.002G304400 expressed protein -
10 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
11 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
12 Sobic.002G158500 ankyrin, putative, expressed -
13 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
14 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
15 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
16 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
17 Sobic.010G191000 expressed protein -
18 Sobic.002G230800 expressed protein -
19 Sobic.007G218100 transmembrane receptor, putative, expressed -
20 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2


Gene co-expression network
sample Sobic009G213950 Sobic009G213950 Sobic004G032900 Sobic004G032900 Sobic009G213950--Sobic004G032900 Sobic007G112100 Sobic007G112100 Sobic009G213950--Sobic007G112100 Sobic001G530600 Sobic001G530600 Sobic009G213950--Sobic001G530600 Sobic001G155500 Sobic001G155500 Sobic009G213950--Sobic001G155500 Sobic002G236700 Sobic002G236700 Sobic009G213950--Sobic002G236700 Sobic009G109300 Sobic009G109300 Sobic009G213950--Sobic009G109300 Sobic001G532800 Sobic001G532800 Sobic009G213950--Sobic001G532800 Sobic002G246900 Sobic002G246900 Sobic009G213950--Sobic002G246900 Sobic002G304400 Sobic002G304400 Sobic009G213950--Sobic002G304400 Sobic004G032900--Sobic007G112100 Sobic007G125300 Sobic007G125300 Sobic004G032900--Sobic007G125300 Sobic006G119300 Sobic006G119300 Sobic004G032900--Sobic006G119300 Sobic004G032900--Sobic002G236700 Sobic004G032900--Sobic009G109300 Sobic004G032900--Sobic002G246900 Sobic010G051100 Sobic010G051100 Sobic004G032900--Sobic010G051100 Sobic006G120600 Sobic006G120600 Sobic004G032900--Sobic006G120600 Sobic010G103700 Sobic010G103700 Sobic004G032900--Sobic010G103700 Sobic007G112100--Sobic009G109300 Sobic007G112100--Sobic001G532800 Sobic007G112100--Sobic004G032900 Sobic002G158500 Sobic002G158500 Sobic007G112100--Sobic002G158500 Sobic007G112100--Sobic002G236700 Sobic007G112100--Sobic006G120600 Sobic001G140700 Sobic001G140700 Sobic007G112100--Sobic001G140700 Sobic007G112100--Sobic002G304400 Sobic007G079600 Sobic007G079600 Sobic007G112100--Sobic007G079600 Sobic010G144900 Sobic010G144900 Sobic001G530600--Sobic010G144900 Sobic008G096200 Sobic008G096200 Sobic001G530600--Sobic008G096200 Sobic001G530600--Sobic009G213950 Sobic010G055400 Sobic010G055400 Sobic001G530600--Sobic010G055400 Sobic006G102900 Sobic006G102900 Sobic001G530600--Sobic006G102900 Sobic001G528600 Sobic001G528600 Sobic001G530600--Sobic001G528600 Sobic001G530600--Sobic002G236700 Sobic007G094400 Sobic007G094400 Sobic001G530600--Sobic007G094400 Sobic002G230800 Sobic002G230800 Sobic001G530600--Sobic002G230800 Sobic001G155500--Sobic007G112100 Sobic004G347500 Sobic004G347500 Sobic001G155500--Sobic004G347500 Sobic009G052600 Sobic009G052600 Sobic001G155500--Sobic009G052600 Sobic003G011800 Sobic003G011800 Sobic001G155500--Sobic003G011800 Sobic010G090100 Sobic010G090100 Sobic001G155500--Sobic010G090100 Sobic001G155500--Sobic009G213950 Sobic006G247800 Sobic006G247800 Sobic001G155500--Sobic006G247800 Sobic002G256900 Sobic002G256900 Sobic001G155500--Sobic002G256900 Sobic005G021000 Sobic005G021000 Sobic001G155500--Sobic005G021000 Sobic002G236700--Sobic002G246900 Sobic002G236700--Sobic001G140700 Sobic002G236700--Sobic001G532800 Sobic003G107200 Sobic003G107200 Sobic002G236700--Sobic003G107200 Sobic002G236700--Sobic009G109300 Sobic002G236700--Sobic007G112100 Sobic002G315400 Sobic002G315400 Sobic002G236700--Sobic002G315400 Sobic007G218100 Sobic007G218100 Sobic002G236700--Sobic007G218100 Sobic010G191000 Sobic010G191000 Sobic002G236700--Sobic010G191000 Sobic009G109300--Sobic007G112100 Sobic006G051000 Sobic006G051000 Sobic009G109300--Sobic006G051000 Sobic009G109300--Sobic010G103700 Sobic006G195500 Sobic006G195500 Sobic009G109300--Sobic006G195500 Sobic001G238900 Sobic001G238900 Sobic009G109300--Sobic001G238900 Sobic009G109300--Sobic002G230800 Sobic003G183700 Sobic003G183700 Sobic009G109300--Sobic003G183700 Sobic003G179500 Sobic003G179500 Sobic009G109300--Sobic003G179500 Sobic009G109300--Sobic002G246900 Sobic001G532800--Sobic007G218100 Sobic001G532800--Sobic007G112100 Sobic001G532800--Sobic002G236700 Sobic010G250400 Sobic010G250400 Sobic001G532800--Sobic010G250400 Sobic001G532800--Sobic002G230800 Sobic001G532800--Sobic002G158500 Sobic003G147500 Sobic003G147500 Sobic001G532800--Sobic003G147500 Sobic001G532800--Sobic009G109300 Sobic008G100700 Sobic008G100700 Sobic001G532800--Sobic008G100700 Sobic004G047100 Sobic004G047100 Sobic002G246900--Sobic004G047100 Sobic010G105400 Sobic010G105400 Sobic002G246900--Sobic010G105400 Sobic002G246900--Sobic010G191000 Sobic002G246900--Sobic003G107200 Sobic002G246900--Sobic001G238900 Sobic009G181500 Sobic009G181500 Sobic002G246900--Sobic009G181500 Sobic002G246900--Sobic002G236700 Sobic001G169800 Sobic001G169800 Sobic002G246900--Sobic001G169800 Sobic002G246900--Sobic002G230800 Sobic001G413100 Sobic001G413100 Sobic002G304400--Sobic001G413100 Sobic008G118300 Sobic008G118300 Sobic002G304400--Sobic008G118300 Sobic004G069400 Sobic004G069400 Sobic002G304400--Sobic004G069400 Sobic002G304400--Sobic007G112100 Sobic001G286100 Sobic001G286100 Sobic002G304400--Sobic001G286100 Sobic001G167500 Sobic001G167500 Sobic002G304400--Sobic001G167500 Sobic001G336050 Sobic001G336050 Sobic002G304400--Sobic001G336050 Sobic001G521100 Sobic001G521100 Sobic002G304400--Sobic001G521100 Sobic001G081900 Sobic001G081900 Sobic002G304400--Sobic001G081900
Octagon: transcription factors


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