Gene annotation
Transcriptome id Sobic.001G530600.2,Sobic.001G530600.1
Synonym CDKA, CDK2, 1, CDKA1, CDC2A, CDC2AAT, Sb01g049350, CDC2
Functional annotation cyclin-dependent kinase A-1, putative, expressed
UniProt C5X0Z4 , A0A1B6QQY9
Pfam PF00069
Panther DB PTHR24056 PTHR24056:SF230
NCBI CDD KOG0594; Protein kinase PCTAIRE and related kinases KOG0662Cyclin-dependent kinase CDK5
KEGG Orthology K02206; cyclin-dependent kinase 2
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G48750 : cell division control 2
RAP-DB (Rice) LOC_Os03g02680.2 : cyclin-dependent kinase A-1, putative, expressed
MaizeGDB (Corn) Zm00025a039929 , Zm00025a000249 , Zm00025a019169 , Zm00025a034943 , Zm00025a052270 , Zm00025a053521
Brachypodium KQK23970
Barley HORVU4Hr1G085830.1 , HORVU4Hr1G085830.9 , HORVU4Hr1G085830.3 , HORVU4Hr1G085830.4 , HORVU4Hr1G085830.6 , HORVU4Hr1G085830.7 , HORVU4Hr1G085830.5 , HORVU4Hr1G085830.2
Wheat TraesCS6A02G078200 , TraesCS4D02G347600 , TraesCS4D02G347600 , TraesCS4D02G347600 , TraesCS5A02G521700 , TraesCS5A02G521700 , TraesCS6B02G105100 , TraesCS4B02G353600 , TraesCS4B02G353600
Populus -


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cDNA sequences
Sobic.001G530600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G144900 fiber protein Fb34, putative, expressed -
2 Sobic.008G096200 AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
3 Sobic.009G213950 - K04799: FEN1, flap endonuclease-1
4 Sobic.010G055400 OsWAK63 - OsWAK receptor-like protein kinase, expressed -
5 Sobic.006G102900 expressed protein -
6 Sobic.001G528600 remorin family protein, putative, expressed -
7 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
8 Sobic.007G094400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fiber protein Fb34, putative, expressed -
9 Sobic.002G230800 expressed protein -
10 Sobic.001G255600 endonuclease/Exonuclease/phosphatase family protein, expressed -
11 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
12 Sobic.003G107200 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
13 Sobic.001G231200 expressed protein -
14 Sobic.006G104100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
15 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
16 Sobic.001G261549 - -
17 Sobic.008G143800 cyclin, putative, expressed K06627: cyclin-A
18 Sobic.004G357500 expressed protein -
19 Sobic.009G087300 mitotic checkpoint family protein, putative, expressed -
20 Sobic.006G120700 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, putative, expressed K03434: N-acetylglucosaminylphosphatidylinositol deacetylase


Gene co-expression network
sample Sobic001G530600 Sobic001G530600 Sobic010G144900 Sobic010G144900 Sobic001G530600--Sobic010G144900 Sobic008G096200 Sobic008G096200 Sobic001G530600--Sobic008G096200 Sobic009G213950 Sobic009G213950 Sobic001G530600--Sobic009G213950 Sobic010G055400 Sobic010G055400 Sobic001G530600--Sobic010G055400 Sobic006G102900 Sobic006G102900 Sobic001G530600--Sobic006G102900 Sobic001G528600 Sobic001G528600 Sobic001G530600--Sobic001G528600 Sobic002G236700 Sobic002G236700 Sobic001G530600--Sobic002G236700 Sobic007G094400 Sobic007G094400 Sobic001G530600--Sobic007G094400 Sobic002G230800 Sobic002G230800 Sobic001G530600--Sobic002G230800 Sobic009G189200 Sobic009G189200 Sobic010G144900--Sobic009G189200 Sobic006G104100 Sobic006G104100 Sobic010G144900--Sobic006G104100 Sobic001G397000 Sobic001G397000 Sobic010G144900--Sobic001G397000 Sobic006G120700 Sobic006G120700 Sobic010G144900--Sobic006G120700 Sobic009G059500 Sobic009G059500 Sobic010G144900--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic010G144900--Sobic002G186900 Sobic007G044400 Sobic007G044400 Sobic010G144900--Sobic007G044400 Sobic010G144900--Sobic002G236700 Sobic001G371100 Sobic001G371100 Sobic010G144900--Sobic001G371100 Sobic001G231200 Sobic001G231200 Sobic008G096200--Sobic001G231200 Sobic010G105400 Sobic010G105400 Sobic008G096200--Sobic010G105400 Sobic010G211800 Sobic010G211800 Sobic008G096200--Sobic010G211800 Sobic002G394500 Sobic002G394500 Sobic008G096200--Sobic002G394500 Sobic001G487200 Sobic001G487200 Sobic008G096200--Sobic001G487200 Sobic005G144600 Sobic005G144600 Sobic008G096200--Sobic005G144600 Sobic003G420300 Sobic003G420300 Sobic008G096200--Sobic003G420300 Sobic002G426800 Sobic002G426800 Sobic008G096200--Sobic002G426800 Sobic001G261549 Sobic001G261549 Sobic008G096200--Sobic001G261549 Sobic004G032900 Sobic004G032900 Sobic009G213950--Sobic004G032900 Sobic007G112100 Sobic007G112100 Sobic009G213950--Sobic007G112100 Sobic009G213950--Sobic001G530600 Sobic001G155500 Sobic001G155500 Sobic009G213950--Sobic001G155500 Sobic009G213950--Sobic002G236700 Sobic009G109300 Sobic009G109300 Sobic009G213950--Sobic009G109300 Sobic001G532800 Sobic001G532800 Sobic009G213950--Sobic001G532800 Sobic002G246900 Sobic002G246900 Sobic009G213950--Sobic002G246900 Sobic002G304400 Sobic002G304400 Sobic009G213950--Sobic002G304400 Sobic010G055400--Sobic001G231200 Sobic001G074100 Sobic001G074100 Sobic010G055400--Sobic001G074100 Sobic005G015300 Sobic005G015300 Sobic010G055400--Sobic005G015300 Sobic001G140700 Sobic001G140700 Sobic010G055400--Sobic001G140700 Sobic003G291000 Sobic003G291000 Sobic010G055400--Sobic003G291000 Sobic009G188900 Sobic009G188900 Sobic010G055400--Sobic009G188900 Sobic002G001100 Sobic002G001100 Sobic010G055400--Sobic002G001100 Sobic007G173000 Sobic007G173000 Sobic010G055400--Sobic007G173000 Sobic001G296800 Sobic001G296800 Sobic010G055400--Sobic001G296800 Sobic001G078600 Sobic001G078600 Sobic006G102900--Sobic001G078600 Sobic003G107200 Sobic003G107200 Sobic006G102900--Sobic003G107200 Sobic009G181500 Sobic009G181500 Sobic006G102900--Sobic009G181500 Sobic006G102900--Sobic001G261549 Sobic007G154500 Sobic007G154500 Sobic006G102900--Sobic007G154500 Sobic006G102900--Sobic002G426800 Sobic010G274000 Sobic010G274000 Sobic006G102900--Sobic010G274000 Sobic004G047100 Sobic004G047100 Sobic006G102900--Sobic004G047100 Sobic006G102900--Sobic009G189200 Sobic001G528600--Sobic001G078600 Sobic001G107200 Sobic001G107200 Sobic001G528600--Sobic001G107200 Sobic002G280700 Sobic002G280700 Sobic001G528600--Sobic002G280700 Sobic004G152200 Sobic004G152200 Sobic001G528600--Sobic004G152200 Sobic006G191700 Sobic006G191700 Sobic001G528600--Sobic006G191700 Sobic001G528600--Sobic010G274000 Sobic004G331200 Sobic004G331200 Sobic001G528600--Sobic004G331200 Sobic005G047100 Sobic005G047100 Sobic001G528600--Sobic005G047100 Sobic001G528600--Sobic006G102900 Sobic002G236700--Sobic002G246900 Sobic002G236700--Sobic001G140700 Sobic002G236700--Sobic001G532800 Sobic002G236700--Sobic003G107200 Sobic002G236700--Sobic009G109300 Sobic002G236700--Sobic007G112100 Sobic002G315400 Sobic002G315400 Sobic002G236700--Sobic002G315400 Sobic007G218100 Sobic007G218100 Sobic002G236700--Sobic007G218100 Sobic010G191000 Sobic010G191000 Sobic002G236700--Sobic010G191000 Sobic010G277300 Sobic010G277300 Sobic007G094400--Sobic010G277300 Sobic007G094400--Sobic001G107200 Sobic007G094400--Sobic006G191700 Sobic004G286700 Sobic004G286700 Sobic007G094400--Sobic004G286700 Sobic007G094400--Sobic008G096200 Sobic007G094400--Sobic001G487200 Sobic007G094400--Sobic001G528600 Sobic001G051300 Sobic001G051300 Sobic007G094400--Sobic001G051300 Sobic006G207400 Sobic006G207400 Sobic007G094400--Sobic006G207400 Sobic001G238900 Sobic001G238900 Sobic002G230800--Sobic001G238900 Sobic002G230800--Sobic010G105400 Sobic006G124400 Sobic006G124400 Sobic002G230800--Sobic006G124400 Sobic001G054700 Sobic001G054700 Sobic002G230800--Sobic001G054700 Sobic003G179500 Sobic003G179500 Sobic002G230800--Sobic003G179500 Sobic002G230800--Sobic009G109300 Sobic002G230800--Sobic007G218100 Sobic002G230800--Sobic002G246900 Sobic003G244000 Sobic003G244000 Sobic002G230800--Sobic003G244000
Octagon: transcription factors


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