Gene annotation
Transcriptome id Sobic.001G255600.1
Synonym Sb01g022760
Functional annotation endonuclease/Exonuclease/phosphatase family protein, expressed
UniProt C5WMB3
Pfam PF03372
Panther DB PTHR15822 PTHR15822:SF4
NCBI CDD KOG2756; Predicted Mg2+-dependent phosphodiesterase TTRAP
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11800 : endonuclease/exonuclease/phosphatase family protein
RAP-DB (Rice) LOC_Os12g22620.1 : endonuclease/Exonuclease/phosphatase family protein, expressed
MaizeGDB (Corn) Zm00025a017829 , Zm00025a017825 , Zm00025a007029
Brachypodium KQJ82170
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G230800 expressed protein -
2 Sobic.010G191000 expressed protein -
3 Sobic.002G246900 expressed protein -
4 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
5 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
6 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
7 Sobic.005G129700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@sex determination protein tasselseed-2, putative, expressed -
8 Sobic.010G227200 expressed protein -
9 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
10 Sobic.001G289900 AT hook motif domain containing protein, expressed -
11 Sobic.006G102900 expressed protein -
12 Sobic.001G238900 OsFBX386 - F-box domain containing protein, expressed -
13 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
14 Sobic.009G194900 glucan endo-1,3-beta-glucosidase-like protein 3 precursor, putative, expressed -
15 Sobic.009G157600 DUF740 domain containing protein, expressed -
16 Sobic.003G107200 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
17 Sobic.004G331200 expressed protein -
18 Sobic.006G124400 ATP binding protein, putative, expressed -
19 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
20 Sobic.003G387700 expressed protein -


Gene co-expression network
sample Sobic001G255600 Sobic001G255600 Sobic002G230800 Sobic002G230800 Sobic001G255600--Sobic002G230800 Sobic010G191000 Sobic010G191000 Sobic001G255600--Sobic010G191000 Sobic002G246900 Sobic002G246900 Sobic001G255600--Sobic002G246900 Sobic010G105400 Sobic010G105400 Sobic001G255600--Sobic010G105400 Sobic004G047100 Sobic004G047100 Sobic001G255600--Sobic004G047100 Sobic001G169800 Sobic001G169800 Sobic001G255600--Sobic001G169800 Sobic005G129700 Sobic005G129700 Sobic001G255600--Sobic005G129700 Sobic010G227200 Sobic010G227200 Sobic001G255600--Sobic010G227200 Sobic002G236700 Sobic002G236700 Sobic001G255600--Sobic002G236700 Sobic001G238900 Sobic001G238900 Sobic002G230800--Sobic001G238900 Sobic002G230800--Sobic010G105400 Sobic006G124400 Sobic006G124400 Sobic002G230800--Sobic006G124400 Sobic001G054700 Sobic001G054700 Sobic002G230800--Sobic001G054700 Sobic003G179500 Sobic003G179500 Sobic002G230800--Sobic003G179500 Sobic009G109300 Sobic009G109300 Sobic002G230800--Sobic009G109300 Sobic007G218100 Sobic007G218100 Sobic002G230800--Sobic007G218100 Sobic002G230800--Sobic002G246900 Sobic003G244000 Sobic003G244000 Sobic002G230800--Sobic003G244000 Sobic010G191000--Sobic003G179500 Sobic010G191000--Sobic002G246900 Sobic010G191000--Sobic010G105400 Sobic010G191000--Sobic004G047100 Sobic010G051100 Sobic010G051100 Sobic010G191000--Sobic010G051100 Sobic010G191000--Sobic002G230800 Sobic005G144600 Sobic005G144600 Sobic010G191000--Sobic005G144600 Sobic010G191000--Sobic001G255600 Sobic006G102900 Sobic006G102900 Sobic010G191000--Sobic006G102900 Sobic002G246900--Sobic004G047100 Sobic002G246900--Sobic010G105400 Sobic002G246900--Sobic010G191000 Sobic003G107200 Sobic003G107200 Sobic002G246900--Sobic003G107200 Sobic002G246900--Sobic001G238900 Sobic009G181500 Sobic009G181500 Sobic002G246900--Sobic009G181500 Sobic002G246900--Sobic002G236700 Sobic002G246900--Sobic001G169800 Sobic002G246900--Sobic002G230800 Sobic010G105400--Sobic005G144600 Sobic010G105400--Sobic004G047100 Sobic009G184200 Sobic009G184200 Sobic010G105400--Sobic009G184200 Sobic005G000500 Sobic005G000500 Sobic010G105400--Sobic005G000500 Sobic001G398400 Sobic001G398400 Sobic010G105400--Sobic001G398400 Sobic010G105400--Sobic003G179500 Sobic010G105400--Sobic006G124400 Sobic007G168900 Sobic007G168900 Sobic010G105400--Sobic007G168900 Sobic002G204400 Sobic002G204400 Sobic010G105400--Sobic002G204400 Sobic004G047100--Sobic010G105400 Sobic004G047100--Sobic005G144600 Sobic004G047100--Sobic009G181500 Sobic004G047100--Sobic002G246900 Sobic002G426800 Sobic002G426800 Sobic004G047100--Sobic002G426800 Sobic004G047100--Sobic003G179500 Sobic001G091500 Sobic001G091500 Sobic004G047100--Sobic001G091500 Sobic006G116500 Sobic006G116500 Sobic004G047100--Sobic006G116500 Sobic003G387700 Sobic003G387700 Sobic004G047100--Sobic003G387700 Sobic001G456500 Sobic001G456500 Sobic001G169800--Sobic001G456500 Sobic001G169800--Sobic006G116500 Sobic003G444300 Sobic003G444300 Sobic001G169800--Sobic003G444300 Sobic001G083300 Sobic001G083300 Sobic001G169800--Sobic001G083300 Sobic002G223900 Sobic002G223900 Sobic001G169800--Sobic002G223900 Sobic003G183700 Sobic003G183700 Sobic001G169800--Sobic003G183700 Sobic001G105800 Sobic001G105800 Sobic001G169800--Sobic001G105800 Sobic004G355500 Sobic004G355500 Sobic001G169800--Sobic004G355500 Sobic001G169800--Sobic003G179500 Sobic009G033800 Sobic009G033800 Sobic005G129700--Sobic009G033800 Sobic005G129700--Sobic001G255600 Sobic005G129700--Sobic010G227200 Sobic001G289900 Sobic001G289900 Sobic005G129700--Sobic001G289900 Sobic005G129700--Sobic006G102900 Sobic010G222100 Sobic010G222100 Sobic005G129700--Sobic010G222100 Sobic005G129700--Sobic010G191000 Sobic001G133300 Sobic001G133300 Sobic005G129700--Sobic001G133300 Sobic004G331200 Sobic004G331200 Sobic005G129700--Sobic004G331200 Sobic006G138900 Sobic006G138900 Sobic010G227200--Sobic006G138900 Sobic009G157600 Sobic009G157600 Sobic010G227200--Sobic009G157600 Sobic002G392500 Sobic002G392500 Sobic010G227200--Sobic002G392500 Sobic010G227200--Sobic006G124400 Sobic010G227200--Sobic005G129700 Sobic010G227200--Sobic001G255600 Sobic004G273000 Sobic004G273000 Sobic010G227200--Sobic004G273000 Sobic010G227200--Sobic002G230800 Sobic010G227200--Sobic001G289900 Sobic002G236700--Sobic002G246900 Sobic001G140700 Sobic001G140700 Sobic002G236700--Sobic001G140700 Sobic001G532800 Sobic001G532800 Sobic002G236700--Sobic001G532800 Sobic002G236700--Sobic003G107200 Sobic002G236700--Sobic009G109300 Sobic007G112100 Sobic007G112100 Sobic002G236700--Sobic007G112100 Sobic002G315400 Sobic002G315400 Sobic002G236700--Sobic002G315400 Sobic002G236700--Sobic007G218100 Sobic002G236700--Sobic010G191000
Octagon: transcription factors


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