Gene annotation
Transcriptome id Sobic.010G227200.1
Synonym Sb10g027090
Functional annotation expressed protein
UniProt C5Z7T0
Pfam -
Panther DB PTHR31722 PTHR31722:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G56020 : -
RAP-DB (Rice) LOC_Os06g46250.1 : expressed protein
MaizeGDB (Corn) Zm00025a038895 , Zm00025a018063 , Zm00025a034812 , Zm00025a041921
Brachypodium KQK17144 , KQJ85862
Barley HORVU5Hr1G011760.2 , HORVU5Hr1G011760.3 , HORVU7Hr1G087770.1 , HORVU7Hr1G106790.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G138900 expressed protein -
2 Sobic.009G157600 DUF740 domain containing protein, expressed -
3 Sobic.002G392500 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
4 Sobic.006G124400 ATP binding protein, putative, expressed -
5 Sobic.005G129700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@sex determination protein tasselseed-2, putative, expressed -
6 Sobic.001G255600 endonuclease/Exonuclease/phosphatase family protein, expressed -
7 Sobic.004G273000 MYB family transcription factor, putative, expressed -
8 Sobic.002G230800 expressed protein -
9 Sobic.001G289900 AT hook motif domain containing protein, expressed -
10 Sobic.001G091500 expressed protein -
11 Sobic.001G477400 AUXIN SIGNALING F-BOX 2, putative, expressed -
12 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
13 Sobic.006G102900 expressed protein -
14 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
15 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.003G387700 expressed protein -
17 Sobic.001G496400 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
18 Sobic.003G328500 Expressed in younger stem(PubMedID : 28649278)@cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
19 Sobic.003G107200 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
20 Sobic.009G120700 microtubule-binding protein TANGLED1, putative, expressed K18636: microtubule-binding protein TANGLED1


Gene co-expression network
sample Sobic010G227200 Sobic010G227200 Sobic006G138900 Sobic006G138900 Sobic010G227200--Sobic006G138900 Sobic009G157600 Sobic009G157600 Sobic010G227200--Sobic009G157600 Sobic002G392500 Sobic002G392500 Sobic010G227200--Sobic002G392500 Sobic006G124400 Sobic006G124400 Sobic010G227200--Sobic006G124400 Sobic005G129700 Sobic005G129700 Sobic010G227200--Sobic005G129700 Sobic001G255600 Sobic001G255600 Sobic010G227200--Sobic001G255600 Sobic004G273000 Sobic004G273000 Sobic010G227200--Sobic004G273000 Sobic002G230800 Sobic002G230800 Sobic010G227200--Sobic002G230800 Sobic001G289900 Sobic001G289900 Sobic010G227200--Sobic001G289900 Sobic006G138900--Sobic010G227200 Sobic003G387700 Sobic003G387700 Sobic006G138900--Sobic003G387700 Sobic006G138900--Sobic009G157600 Sobic002G162300 Sobic002G162300 Sobic006G138900--Sobic002G162300 Sobic009G120700 Sobic009G120700 Sobic006G138900--Sobic009G120700 Sobic001G091500 Sobic001G091500 Sobic006G138900--Sobic001G091500 Sobic006G134200 Sobic006G134200 Sobic006G138900--Sobic006G134200 Sobic002G426800 Sobic002G426800 Sobic006G138900--Sobic002G426800 Sobic003G328500 Sobic003G328500 Sobic006G138900--Sobic003G328500 Sobic009G157600--Sobic010G227200 Sobic004G047100 Sobic004G047100 Sobic009G157600--Sobic004G047100 Sobic009G157600--Sobic002G230800 Sobic003G107200 Sobic003G107200 Sobic009G157600--Sobic003G107200 Sobic009G157600--Sobic006G138900 Sobic006G081800 Sobic006G081800 Sobic009G157600--Sobic006G081800 Sobic009G157600--Sobic001G255600 Sobic009G157600--Sobic001G091500 Sobic009G157600--Sobic009G120700 Sobic002G392500--Sobic004G273000 Sobic002G392500--Sobic002G230800 Sobic002G392500--Sobic006G124400 Sobic010G261700 Sobic010G261700 Sobic002G392500--Sobic010G261700 Sobic007G218100 Sobic007G218100 Sobic002G392500--Sobic007G218100 Sobic007G027900 Sobic007G027900 Sobic002G392500--Sobic007G027900 Sobic004G052200 Sobic004G052200 Sobic002G392500--Sobic004G052200 Sobic002G392500--Sobic010G227200 Sobic010G191000 Sobic010G191000 Sobic002G392500--Sobic010G191000 Sobic002G296000 Sobic002G296000 Sobic006G124400--Sobic002G296000 Sobic010G105400 Sobic010G105400 Sobic006G124400--Sobic010G105400 Sobic009G101100 Sobic009G101100 Sobic006G124400--Sobic009G101100 Sobic006G124400--Sobic007G027900 Sobic006G124400--Sobic004G273000 Sobic005G005700 Sobic005G005700 Sobic006G124400--Sobic005G005700 Sobic008G006800 Sobic008G006800 Sobic006G124400--Sobic008G006800 Sobic001G477400 Sobic001G477400 Sobic006G124400--Sobic001G477400 Sobic001G398400 Sobic001G398400 Sobic006G124400--Sobic001G398400 Sobic009G033800 Sobic009G033800 Sobic005G129700--Sobic009G033800 Sobic005G129700--Sobic001G255600 Sobic005G129700--Sobic010G227200 Sobic005G129700--Sobic001G289900 Sobic006G102900 Sobic006G102900 Sobic005G129700--Sobic006G102900 Sobic010G222100 Sobic010G222100 Sobic005G129700--Sobic010G222100 Sobic005G129700--Sobic010G191000 Sobic001G133300 Sobic001G133300 Sobic005G129700--Sobic001G133300 Sobic004G331200 Sobic004G331200 Sobic005G129700--Sobic004G331200 Sobic001G255600--Sobic002G230800 Sobic001G255600--Sobic010G191000 Sobic002G246900 Sobic002G246900 Sobic001G255600--Sobic002G246900 Sobic001G255600--Sobic010G105400 Sobic001G255600--Sobic004G047100 Sobic001G169800 Sobic001G169800 Sobic001G255600--Sobic001G169800 Sobic001G255600--Sobic005G129700 Sobic001G255600--Sobic010G227200 Sobic002G236700 Sobic002G236700 Sobic001G255600--Sobic002G236700 Sobic004G273000--Sobic006G124400 Sobic004G273000--Sobic001G477400 Sobic004G273000--Sobic002G392500 Sobic004G273000--Sobic007G027900 Sobic004G273000--Sobic010G105400 Sobic004G273000--Sobic002G296000 Sobic004G273000--Sobic001G289900 Sobic004G273000--Sobic010G261700 Sobic004G273000--Sobic005G005700 Sobic001G238900 Sobic001G238900 Sobic002G230800--Sobic001G238900 Sobic002G230800--Sobic010G105400 Sobic002G230800--Sobic006G124400 Sobic001G054700 Sobic001G054700 Sobic002G230800--Sobic001G054700 Sobic003G179500 Sobic003G179500 Sobic002G230800--Sobic003G179500 Sobic009G109300 Sobic009G109300 Sobic002G230800--Sobic009G109300 Sobic002G230800--Sobic007G218100 Sobic002G230800--Sobic002G246900 Sobic003G244000 Sobic003G244000 Sobic002G230800--Sobic003G244000 Sobic001G289900--Sobic010G105400 Sobic002G289800 Sobic002G289800 Sobic001G289900--Sobic002G289800 Sobic007G132900 Sobic007G132900 Sobic001G289900--Sobic007G132900 Sobic001G289900--Sobic003G387700 Sobic001G289900--Sobic004G047100 Sobic001G289900--Sobic001G398400 Sobic001G289900--Sobic004G273000 Sobic001G289900--Sobic001G091500 Sobic001G289900--Sobic002G426800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.