Gene annotation
Transcriptome id Sobic.001G155500.1
Synonym Sb01g013540, PDH-E1BETA
Functional annotation transketolase, putative, expressed
UniProt C5WR68
Pfam PF02780 PF02779
Panther DB PTHR11624 PTHR11624:SF76
NCBI CDD -
KEGG Orthology K00162; PDHB, pyruvate dehydrogenase E1 component beta subunit
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT2G34590 : Transketolase family protein
RAP-DB (Rice) LOC_Os03g44300.1 : transketolase, putative, expressed
MaizeGDB (Corn) Zm00025a007273
Brachypodium PNT62303 , PNT62305 , PNT62304 , KQJ85753 , KQJ85754 , KQK13985
Barley HORVU0Hr1G009910.8 , HORVU0Hr1G009910.7 , HORVU0Hr1G009910.6 , HORVU0Hr1G009910.5 , HORVU0Hr1G009910.4 , HORVU0Hr1G009910.3 , HORVU0Hr1G009910.2 , HORVU0Hr1G009910.1
Wheat TraesCS5B02G376400 , TraesCS5B02G030400 , TraesCS5A02G030800 , TraesCS5A02G374500 , TraesCS5D02G039000 , TraesCS5D02G039000 , TraesCS5D02G384100
Populus -


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cDNA sequences
Sobic.001G155500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
2 Sobic.004G347500 2-phosphoglycerate kinase-related, putative, expressed -
3 Sobic.009G052600 universal stress protein domain containing protein, putative, expressed -
4 Sobic.003G011800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase
5 Sobic.010G090100 phosphoglycerate mutase, putative, expressed K01834: PGAM, 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
6 Sobic.009G213950 - K04799: FEN1, flap endonuclease-1
7 Sobic.006G247800 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.002G256900 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
9 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
10 Sobic.010G024600 aminomethyltransferase, putative, expressed K06980: tRNA-modifying protein YgfZ
11 Sobic.004G291200 - -
12 Sobic.001G197800 - -
13 Sobic.003G179000 dienelactone hydrolase family protein, expressed K01061: carboxymethylenebutenolidase
14 Sobic.004G033200 expressed protein -
15 Sobic.002G055800 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
16 Sobic.009G052200 dihydrolipoyl dehydrogenase, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
17 Sobic.004G123200 MYB family transcription factor, putative, expressed -
18 Sobic.001G104500 growth-regulating factor, putative, expressed -
19 Sobic.002G341300 expressed protein -
20 Sobic.009G230000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transcription factor HBP-1b, putative, expressed -


Gene co-expression network
sample Sobic001G155500 Sobic001G155500 Sobic007G112100 Sobic007G112100 Sobic001G155500--Sobic007G112100 Sobic004G347500 Sobic004G347500 Sobic001G155500--Sobic004G347500 Sobic009G052600 Sobic009G052600 Sobic001G155500--Sobic009G052600 Sobic003G011800 Sobic003G011800 Sobic001G155500--Sobic003G011800 Sobic010G090100 Sobic010G090100 Sobic001G155500--Sobic010G090100 Sobic009G213950 Sobic009G213950 Sobic001G155500--Sobic009G213950 Sobic006G247800 Sobic006G247800 Sobic001G155500--Sobic006G247800 Sobic002G256900 Sobic002G256900 Sobic001G155500--Sobic002G256900 Sobic005G021000 Sobic005G021000 Sobic001G155500--Sobic005G021000 Sobic009G109300 Sobic009G109300 Sobic007G112100--Sobic009G109300 Sobic001G532800 Sobic001G532800 Sobic007G112100--Sobic001G532800 Sobic004G032900 Sobic004G032900 Sobic007G112100--Sobic004G032900 Sobic002G158500 Sobic002G158500 Sobic007G112100--Sobic002G158500 Sobic002G236700 Sobic002G236700 Sobic007G112100--Sobic002G236700 Sobic006G120600 Sobic006G120600 Sobic007G112100--Sobic006G120600 Sobic001G140700 Sobic001G140700 Sobic007G112100--Sobic001G140700 Sobic002G304400 Sobic002G304400 Sobic007G112100--Sobic002G304400 Sobic007G079600 Sobic007G079600 Sobic007G112100--Sobic007G079600 Sobic004G347500--Sobic005G021000 Sobic002G177600 Sobic002G177600 Sobic004G347500--Sobic002G177600 Sobic002G240000 Sobic002G240000 Sobic004G347500--Sobic002G240000 Sobic001G004600 Sobic001G004600 Sobic004G347500--Sobic001G004600 Sobic001G534200 Sobic001G534200 Sobic004G347500--Sobic001G534200 Sobic002G232900 Sobic002G232900 Sobic004G347500--Sobic002G232900 Sobic007G191500 Sobic007G191500 Sobic004G347500--Sobic007G191500 Sobic006G217800 Sobic006G217800 Sobic004G347500--Sobic006G217800 Sobic001G386600 Sobic001G386600 Sobic004G347500--Sobic001G386600 Sobic009G052600--Sobic004G347500 Sobic010G024600 Sobic010G024600 Sobic009G052600--Sobic010G024600 Sobic003G098300 Sobic003G098300 Sobic009G052600--Sobic003G098300 Sobic009G052600--Sobic001G386600 Sobic009G052600--Sobic005G021000 Sobic007G053100 Sobic007G053100 Sobic009G052600--Sobic007G053100 Sobic001G261420 Sobic001G261420 Sobic009G052600--Sobic001G261420 Sobic009G052600--Sobic002G177600 Sobic009G052600--Sobic003G011800 Sobic003G011800--Sobic001G386600 Sobic003G011800--Sobic001G261420 Sobic003G011800--Sobic004G347500 Sobic003G011800--Sobic005G021000 Sobic003G443400 Sobic003G443400 Sobic003G011800--Sobic003G443400 Sobic006G095900 Sobic006G095900 Sobic003G011800--Sobic006G095900 Sobic003G011800--Sobic007G191500 Sobic001G254800 Sobic001G254800 Sobic003G011800--Sobic001G254800 Sobic003G011800--Sobic001G004600 Sobic003G019400 Sobic003G019400 Sobic010G090100--Sobic003G019400 Sobic001G197800 Sobic001G197800 Sobic010G090100--Sobic001G197800 Sobic008G170500 Sobic008G170500 Sobic010G090100--Sobic008G170500 Sobic003G300900 Sobic003G300900 Sobic010G090100--Sobic003G300900 Sobic006G245500 Sobic006G245500 Sobic010G090100--Sobic006G245500 Sobic008G135500 Sobic008G135500 Sobic010G090100--Sobic008G135500 Sobic004G029450 Sobic004G029450 Sobic010G090100--Sobic004G029450 Sobic001G261400 Sobic001G261400 Sobic010G090100--Sobic001G261400 Sobic002G230900 Sobic002G230900 Sobic010G090100--Sobic002G230900 Sobic009G213950--Sobic004G032900 Sobic009G213950--Sobic007G112100 Sobic001G530600 Sobic001G530600 Sobic009G213950--Sobic001G530600 Sobic009G213950--Sobic001G155500 Sobic009G213950--Sobic002G236700 Sobic009G213950--Sobic009G109300 Sobic009G213950--Sobic001G532800 Sobic002G246900 Sobic002G246900 Sobic009G213950--Sobic002G246900 Sobic009G213950--Sobic002G304400 Sobic004G311600 Sobic004G311600 Sobic006G247800--Sobic004G311600 Sobic009G084100 Sobic009G084100 Sobic006G247800--Sobic009G084100 Sobic006G247800--Sobic002G256900 Sobic006G247800--Sobic002G232900 Sobic006G247800--Sobic002G230900 Sobic007G097100 Sobic007G097100 Sobic006G247800--Sobic007G097100 Sobic001G336200 Sobic001G336200 Sobic006G247800--Sobic001G336200 Sobic004G207766 Sobic004G207766 Sobic006G247800--Sobic004G207766 Sobic003G350400 Sobic003G350400 Sobic006G247800--Sobic003G350400 Sobic006G226000 Sobic006G226000 Sobic002G256900--Sobic006G226000 Sobic003G086800 Sobic003G086800 Sobic002G256900--Sobic003G086800 Sobic004G123200 Sobic004G123200 Sobic002G256900--Sobic004G123200 Sobic002G256900--Sobic004G347500 Sobic007G160400 Sobic007G160400 Sobic002G256900--Sobic007G160400 Sobic009G012500 Sobic009G012500 Sobic002G256900--Sobic009G012500 Sobic002G256900--Sobic002G240000 Sobic001G203350 Sobic001G203350 Sobic002G256900--Sobic001G203350 Sobic002G256900--Sobic005G021000 Sobic005G021000--Sobic001G254800 Sobic005G021000--Sobic006G217800 Sobic005G021000--Sobic003G443400 Sobic007G025600 Sobic007G025600 Sobic005G021000--Sobic007G025600 Sobic008G149300 Sobic008G149300 Sobic005G021000--Sobic008G149300 Sobic005G021000--Sobic001G534200 Sobic009G103800 Sobic009G103800 Sobic005G021000--Sobic009G103800 Sobic006G167700 Sobic006G167700 Sobic005G021000--Sobic006G167700 Sobic001G166900 Sobic001G166900 Sobic005G021000--Sobic001G166900
Octagon: transcription factors


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