Gene annotation
Transcriptome id Sobic.009G230000.1
Synonym Sb09g028290
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
transcription factor HBP-1b, putative, expressed
UniProt C5YVH9
Pfam PF14144
Panther DB PTHR22952 PTHR22952:SF210
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G14880 : -
RAP-DB (Rice) LOC_Os05g48650.1 : transcription factor HBP-1b, putative, expressed
MaizeGDB (Corn) Zm00025a044541
Brachypodium -
Barley HORVU1Hr1G086580.1 , HORVU1Hr1G086580.2
Wheat -
Populus -


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cDNA sequences
Sobic.009G230000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G217800 helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.003G443400 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
3 Sobic.007G191500 - -
4 Sobic.001G463600 - -
5 Sobic.008G159000 - -
6 Sobic.001G166900 B3 DNA binding domain containing protein, expressed -
7 Sobic.002G197700 -(PubMedID : 23108465)@ZOS4-05 - C2H2 zinc finger protein, expressed -
8 Sobic.010G125000 steroid nuclear receptor, ligand-binding, putative, expressed -
9 Sobic.002G211300 aminotransferase, classes I and II, domain containing protein, expressed K00814: GPT, alanine transaminase
10 Sobic.001G208500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
11 Sobic.006G055900 expressed protein -
12 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
13 Sobic.001G165600 THION1 - Plant thionin family protein precursor, putative, expressed -
14 Sobic.003G395000 cysteine proteinase EP-B 1 precursor, putative, expressed -
15 Sobic.001G261420 - -
16 Sobic.001G393101 - -
17 Sobic.002G393100 dehydrogenase/reductase, putative, expressed -
18 Sobic.003G243900 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
19 Sobic.006G167700 oleosin, putative, expressed -
20 Sobic.004G164800 poly synthetase 3, putative, expressed K10798: poly [ADP-ribose] polymerase 2/3/4


Gene co-expression network
sample Sobic009G230000 Sobic009G230000 Sobic006G217800 Sobic006G217800 Sobic009G230000--Sobic006G217800 Sobic003G443400 Sobic003G443400 Sobic009G230000--Sobic003G443400 Sobic007G191500 Sobic007G191500 Sobic009G230000--Sobic007G191500 Sobic001G463600 Sobic001G463600 Sobic009G230000--Sobic001G463600 Sobic008G159000 Sobic008G159000 Sobic009G230000--Sobic008G159000 Sobic001G166900 Sobic001G166900 Sobic009G230000--Sobic001G166900 Sobic002G197700 Sobic002G197700 Sobic009G230000--Sobic002G197700 Sobic010G125000 Sobic010G125000 Sobic009G230000--Sobic010G125000 Sobic002G211300 Sobic002G211300 Sobic009G230000--Sobic002G211300 Sobic006G217800--Sobic003G443400 Sobic001G393101 Sobic001G393101 Sobic006G217800--Sobic001G393101 Sobic006G217800--Sobic001G166900 Sobic006G167700 Sobic006G167700 Sobic006G217800--Sobic006G167700 Sobic002G184700 Sobic002G184700 Sobic006G217800--Sobic002G184700 Sobic009G103800 Sobic009G103800 Sobic006G217800--Sobic009G103800 Sobic008G149300 Sobic008G149300 Sobic006G217800--Sobic008G149300 Sobic001G344300 Sobic001G344300 Sobic006G217800--Sobic001G344300 Sobic001G165600 Sobic001G165600 Sobic006G217800--Sobic001G165600 Sobic003G443400--Sobic006G217800 Sobic003G443400--Sobic001G393101 Sobic004G349550 Sobic004G349550 Sobic003G443400--Sobic004G349550 Sobic003G443400--Sobic008G149300 Sobic003G443400--Sobic009G103800 Sobic003G443400--Sobic006G167700 Sobic003G443400--Sobic001G166900 Sobic003G443400--Sobic001G344300 Sobic005G184700 Sobic005G184700 Sobic003G443400--Sobic005G184700 Sobic001G261420 Sobic001G261420 Sobic007G191500--Sobic001G261420 Sobic001G122600 Sobic001G122600 Sobic007G191500--Sobic001G122600 Sobic002G394466 Sobic002G394466 Sobic001G463600--Sobic002G394466 Sobic002G040201 Sobic002G040201 Sobic001G463600--Sobic002G040201 Sobic003G243900 Sobic003G243900 Sobic001G463600--Sobic003G243900 Sobic001G366300 Sobic001G366300 Sobic001G463600--Sobic001G366300 Sobic010G111450 Sobic010G111450 Sobic001G463600--Sobic010G111450 Sobic003G372600 Sobic003G372600 Sobic001G463600--Sobic003G372600 Sobic001G208500 Sobic001G208500 Sobic001G463600--Sobic001G208500 Sobic001G463600--Sobic004G349550 Sobic001G463600--Sobic002G211300 Sobic008G159000--Sobic002G197700 Sobic004G164800 Sobic004G164800 Sobic008G159000--Sobic004G164800 Sobic008G159000--Sobic002G211300 Sobic008G159000--Sobic001G208500 Sobic008G159000--Sobic003G372600 Sobic009G037100 Sobic009G037100 Sobic008G159000--Sobic009G037100 Sobic008G159000--Sobic010G125000 Sobic002G393100 Sobic002G393100 Sobic008G159000--Sobic002G393100 Sobic008G159000--Sobic002G184700 Sobic001G166900--Sobic006G167700 Sobic001G166900--Sobic002G184700 Sobic006G248000 Sobic006G248000 Sobic001G166900--Sobic006G248000 Sobic002G046000 Sobic002G046000 Sobic001G166900--Sobic002G046000 Sobic001G166900--Sobic009G103800 Sobic001G166900--Sobic001G344300 Sobic001G166900--Sobic003G372600 Sobic001G166900--Sobic002G211300 Sobic010G198900 Sobic010G198900 Sobic001G166900--Sobic010G198900 Sobic002G197700--Sobic008G159000 Sobic002G197700--Sobic002G211300 Sobic002G197700--Sobic010G125000 Sobic002G197700--Sobic002G393100 Sobic002G197700--Sobic004G164800 Sobic002G197700--Sobic001G208500 Sobic002G197700--Sobic003G372600 Sobic002G197700--Sobic001G165600 Sobic002G197700--Sobic009G037100 Sobic010G125000--Sobic002G211300 Sobic010G125000--Sobic001G165600 Sobic010G125000--Sobic006G248000 Sobic010G125000--Sobic003G372600 Sobic010G125000--Sobic006G167700 Sobic010G125000--Sobic002G197700 Sobic010G125000--Sobic008G159000 Sobic010G125000--Sobic001G166900 Sobic010G125000--Sobic004G164800 Sobic002G211300--Sobic010G125000 Sobic002G211300--Sobic003G372600 Sobic002G211300--Sobic006G248000 Sobic002G211300--Sobic006G167700 Sobic002G211300--Sobic001G208500 Sobic002G211300--Sobic001G165600 Sobic002G211300--Sobic002G197700 Sobic002G211300--Sobic004G164800 Sobic002G211300--Sobic008G159000
Octagon: transcription factors


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