Gene annotation
Transcriptome id Sobic.003G243900.1
Synonym SBH2, Sb03g030030
Functional annotation sphingolipid C4-hydroxylase SUR2, putative, expressed
UniProt C5XFB7
Pfam PF04116
Panther DB PTHR11863 PTHR11863:SF50
NCBI CDD KOG0874; Sphingolipid hydroxylase
KEGG Orthology K04713; sphinganine C4-monooxygenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0006633fatty acid biosynthetic process GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT1G14290 : sphingoid base hydroxylase 2
RAP-DB (Rice) LOC_Os01g46940.1 : sphingolipid C4-hydroxylase SUR2, putative, expressed
MaizeGDB (Corn) Zm00025a038712 , Zm00025a028178
Brachypodium KQK09021
Barley HORVU3Hr1G059300.1 , HORVU3Hr1G059300.2
Wheat TraesCS3A02G238600 , TraesCS7D02G077600 , TraesCS3D02G239000 , TraesCS3B02G267100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G463600 - -
2 Sobic.002G040201 - -
3 Sobic.002G394466 - -
4 Sobic.009G230000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transcription factor HBP-1b, putative, expressed -
5 Sobic.010G111450 - -
6 Sobic.002G049900 - -
7 Sobic.006G095900 OsSCP60 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
8 Sobic.001G366300 telomerase reverse transcriptase, putative, expressed K11126: TERT, telomerase reverse transcriptase
9 Sobic.006G055900 expressed protein -
10 Sobic.008G159000 - -
11 Sobic.010G269950 - -
12 Sobic.002G197700 -(PubMedID : 23108465)@ZOS4-05 - C2H2 zinc finger protein, expressed -
13 Sobic.002G393100 dehydrogenase/reductase, putative, expressed -
14 Sobic.001G208500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
15 Sobic.002G211300 aminotransferase, classes I and II, domain containing protein, expressed K00814: GPT, alanine transaminase
16 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
17 Sobic.004G164800 poly synthetase 3, putative, expressed K10798: poly [ADP-ribose] polymerase 2/3/4
18 Sobic.003G395000 cysteine proteinase EP-B 1 precursor, putative, expressed -
19 Sobic.010G125000 steroid nuclear receptor, ligand-binding, putative, expressed -
20 Sobic.009G037100 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed -


Gene co-expression network
sample Sobic003G243900 Sobic003G243900 Sobic001G463600 Sobic001G463600 Sobic003G243900--Sobic001G463600 Sobic002G040201 Sobic002G040201 Sobic003G243900--Sobic002G040201 Sobic002G394466 Sobic002G394466 Sobic003G243900--Sobic002G394466 Sobic009G230000 Sobic009G230000 Sobic003G243900--Sobic009G230000 Sobic010G111450 Sobic010G111450 Sobic003G243900--Sobic010G111450 Sobic002G049900 Sobic002G049900 Sobic003G243900--Sobic002G049900 Sobic006G095900 Sobic006G095900 Sobic003G243900--Sobic006G095900 Sobic001G366300 Sobic001G366300 Sobic003G243900--Sobic001G366300 Sobic006G055900 Sobic006G055900 Sobic003G243900--Sobic006G055900 Sobic001G463600--Sobic002G394466 Sobic001G463600--Sobic002G040201 Sobic001G463600--Sobic003G243900 Sobic001G463600--Sobic001G366300 Sobic001G463600--Sobic010G111450 Sobic003G372600 Sobic003G372600 Sobic001G463600--Sobic003G372600 Sobic001G208500 Sobic001G208500 Sobic001G463600--Sobic001G208500 Sobic004G349550 Sobic004G349550 Sobic001G463600--Sobic004G349550 Sobic002G211300 Sobic002G211300 Sobic001G463600--Sobic002G211300 Sobic003G013950 Sobic003G013950 Sobic002G040201--Sobic003G013950 Sobic002G040201--Sobic010G111450 Sobic002G040201--Sobic001G463600 Sobic002G040201--Sobic002G394466 Sobic002G040201--Sobic003G243900 Sobic002G040201--Sobic001G366300 Sobic006G076100 Sobic006G076100 Sobic002G040201--Sobic006G076100 Sobic002G040201--Sobic009G230000 Sobic004G138600 Sobic004G138600 Sobic002G040201--Sobic004G138600 Sobic002G394466--Sobic001G463600 Sobic002G394466--Sobic002G040201 Sobic002G394466--Sobic004G349550 Sobic002G394466--Sobic001G366300 Sobic008G149300 Sobic008G149300 Sobic002G394466--Sobic008G149300 Sobic001G122600 Sobic001G122600 Sobic002G394466--Sobic001G122600 Sobic006G217800 Sobic006G217800 Sobic009G230000--Sobic006G217800 Sobic003G443400 Sobic003G443400 Sobic009G230000--Sobic003G443400 Sobic007G191500 Sobic007G191500 Sobic009G230000--Sobic007G191500 Sobic009G230000--Sobic001G463600 Sobic008G159000 Sobic008G159000 Sobic009G230000--Sobic008G159000 Sobic001G166900 Sobic001G166900 Sobic009G230000--Sobic001G166900 Sobic002G197700 Sobic002G197700 Sobic009G230000--Sobic002G197700 Sobic010G125000 Sobic010G125000 Sobic009G230000--Sobic010G125000 Sobic009G230000--Sobic002G211300 Sobic010G111450--Sobic002G040201 Sobic010G111450--Sobic003G013950 Sobic010G111450--Sobic006G076100 Sobic010G111450--Sobic002G394466 Sobic010G111450--Sobic001G463600 Sobic002G251050 Sobic002G251050 Sobic010G111450--Sobic002G251050 Sobic010G111450--Sobic001G366300 Sobic010G111450--Sobic004G138600 Sobic010G111450--Sobic003G243900 Sobic002G204350 Sobic002G204350 Sobic002G049900--Sobic002G204350 Sobic001G165600 Sobic001G165600 Sobic002G049900--Sobic001G165600 Sobic002G049900--Sobic001G122600 Sobic006G095900--Sobic004G349550 Sobic005G184700 Sobic005G184700 Sobic006G095900--Sobic005G184700 Sobic006G095900--Sobic001G165600 Sobic006G095900--Sobic008G149300 Sobic005G184800 Sobic005G184800 Sobic006G095900--Sobic005G184800 Sobic009G246250 Sobic009G246250 Sobic006G095900--Sobic009G246250 Sobic006G095900--Sobic001G122600 Sobic001G366300--Sobic001G463600 Sobic001G366300--Sobic002G394466 Sobic002G240000 Sobic002G240000 Sobic001G366300--Sobic002G240000 Sobic001G366300--Sobic002G040201 Sobic001G136400 Sobic001G136400 Sobic001G366300--Sobic001G136400 Sobic002G055800 Sobic002G055800 Sobic001G366300--Sobic002G055800 Sobic008G018100 Sobic008G018100 Sobic001G366300--Sobic008G018100 Sobic009G012500 Sobic009G012500 Sobic001G366300--Sobic009G012500 Sobic001G366300--Sobic008G149300 Sobic002G393100 Sobic002G393100 Sobic006G055900--Sobic002G393100 Sobic003G395000 Sobic003G395000 Sobic006G055900--Sobic003G395000 Sobic004G164800 Sobic004G164800 Sobic006G055900--Sobic004G164800 Sobic006G055900--Sobic008G159000 Sobic006G055900--Sobic002G197700 Sobic009G037100 Sobic009G037100 Sobic006G055900--Sobic009G037100 Sobic006G055900--Sobic001G208500 Sobic002G401400 Sobic002G401400 Sobic006G055900--Sobic002G401400 Sobic001G380800 Sobic001G380800 Sobic006G055900--Sobic001G380800
Octagon: transcription factors


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