Gene annotation
Transcriptome id Sobic.001G366300.2,Sobic.001G366300.1
Synonym TERT, ATTERT
Functional annotation telomerase reverse transcriptase, putative, expressed
UniProt A0A1Z5S9R8
Pfam PF12009
Panther DB PTHR12066 PTHR12066:SF0
NCBI CDD KOG1005; Telomerase catalytic subunit/reverse transcriptase TERT
KEGG Orthology K11126; TERT, telomerase reverse transcriptase
Gene Ontology GO:0003964; RNA-directed DNA polymerase activity


Orthologs (automatic annotation)
TAIR AT5G16850 : telomerase reverse transcriptase
RAP-DB (Rice) LOC_Os12g19549.1 : telomerase reverse transcriptase, putative, expressed
MaizeGDB (Corn) Zm00025a049327 , Zm00025a025960
Brachypodium PNT76058 , PNT76059 , PNT76055 , PNT76057 , PNT76060 , KQK18590 , PNT76061
Barley HORVU7Hr1G043370.8 , HORVU7Hr1G043370.9 , HORVU7Hr1G043370.6 , HORVU7Hr1G043370.7 , HORVU7Hr1G043370.5 , HORVU7Hr1G043370.2 , HORVU7Hr1G043370.1 , HORVU7Hr1G043370.14 , HORVU7Hr1G043370.15 , HORVU7Hr1G043370.16 , HORVU7Hr1G043370.17 , HORVU7Hr1G043370.10 , HORVU7Hr1G043370.11 , HORVU7Hr1G043370.12 , HORVU7Hr1G043370.13 , HORVU7Hr1G043370.18
Wheat TraesCS7D02G216200 , TraesCS7D02G216200 , TraesCS7A02G214100 , TraesCS7A02G214100 , TraesCS7B02G121400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G366300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G463600 - -
2 Sobic.002G394466 - -
3 Sobic.002G240000 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
4 Sobic.002G040201 - -
5 Sobic.001G136400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Desulfoglucosinolate sulfotransferase (At)(PubMedID : 27208977)@sulfotransferase domain containing protein, expressed -
6 Sobic.002G055800 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
7 Sobic.008G018100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
8 Sobic.009G012500 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
9 Sobic.008G149300 B3 DNA binding domain containing protein, expressed -
10 Sobic.005G054900 acyl-CoA synthetase protein, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
11 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
12 Sobic.006G083900 PHD-finger domain containing protein, expressed -
13 Sobic.010G110100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"A transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659933)@transcription factor, putative, expressed K14431: transcription factor TGA
14 Sobic.004G349550 - K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
15 Sobic.003G443400 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
16 Sobic.006G217800 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.007G008500 basic helix-loop-helix family protein, putative, expressed -
18 Sobic.009G246250 - -
19 Sobic.006G095900 OsSCP60 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
20 Sobic.010G111450 - -


Gene co-expression network
sample Sobic001G366300 Sobic001G366300 Sobic001G463600 Sobic001G463600 Sobic001G366300--Sobic001G463600 Sobic002G394466 Sobic002G394466 Sobic001G366300--Sobic002G394466 Sobic002G240000 Sobic002G240000 Sobic001G366300--Sobic002G240000 Sobic002G040201 Sobic002G040201 Sobic001G366300--Sobic002G040201 Sobic001G136400 Sobic001G136400 Sobic001G366300--Sobic001G136400 Sobic002G055800 Sobic002G055800 Sobic001G366300--Sobic002G055800 Sobic008G018100 Sobic008G018100 Sobic001G366300--Sobic008G018100 Sobic009G012500 Sobic009G012500 Sobic001G366300--Sobic009G012500 Sobic008G149300 Sobic008G149300 Sobic001G366300--Sobic008G149300 Sobic001G463600--Sobic002G394466 Sobic001G463600--Sobic002G040201 Sobic003G243900 Sobic003G243900 Sobic001G463600--Sobic003G243900 Sobic001G463600--Sobic001G366300 Sobic010G111450 Sobic010G111450 Sobic001G463600--Sobic010G111450 Sobic003G372600 Sobic003G372600 Sobic001G463600--Sobic003G372600 Sobic001G208500 Sobic001G208500 Sobic001G463600--Sobic001G208500 Sobic004G349550 Sobic004G349550 Sobic001G463600--Sobic004G349550 Sobic002G211300 Sobic002G211300 Sobic001G463600--Sobic002G211300 Sobic002G394466--Sobic001G463600 Sobic002G394466--Sobic002G040201 Sobic002G394466--Sobic004G349550 Sobic002G394466--Sobic001G366300 Sobic002G394466--Sobic008G149300 Sobic001G122600 Sobic001G122600 Sobic002G394466--Sobic001G122600 Sobic005G021000 Sobic005G021000 Sobic002G240000--Sobic005G021000 Sobic001G254800 Sobic001G254800 Sobic002G240000--Sobic001G254800 Sobic001G534200 Sobic001G534200 Sobic002G240000--Sobic001G534200 Sobic002G240000--Sobic008G149300 Sobic009G246250 Sobic009G246250 Sobic002G240000--Sobic009G246250 Sobic006G083900 Sobic006G083900 Sobic002G240000--Sobic006G083900 Sobic010G053400 Sobic010G053400 Sobic002G240000--Sobic010G053400 Sobic007G025600 Sobic007G025600 Sobic002G240000--Sobic007G025600 Sobic002G240000--Sobic004G349550 Sobic003G013950 Sobic003G013950 Sobic002G040201--Sobic003G013950 Sobic002G040201--Sobic010G111450 Sobic002G040201--Sobic001G463600 Sobic002G040201--Sobic002G394466 Sobic002G040201--Sobic003G243900 Sobic002G040201--Sobic001G366300 Sobic006G076100 Sobic006G076100 Sobic002G040201--Sobic006G076100 Sobic009G230000 Sobic009G230000 Sobic002G040201--Sobic009G230000 Sobic004G138600 Sobic004G138600 Sobic002G040201--Sobic004G138600 Sobic009G014800 Sobic009G014800 Sobic001G136400--Sobic009G014800 Sobic001G136400--Sobic009G012500 Sobic001G203350 Sobic001G203350 Sobic001G136400--Sobic001G203350 Sobic001G136400--Sobic010G053400 Sobic001G136400--Sobic002G240000 Sobic001G136400--Sobic008G149300 Sobic001G136400--Sobic009G246250 Sobic001G136400--Sobic006G083900 Sobic002G197700 Sobic002G197700 Sobic001G136400--Sobic002G197700 Sobic004G123200 Sobic004G123200 Sobic002G055800--Sobic004G123200 Sobic006G226000 Sobic006G226000 Sobic002G055800--Sobic006G226000 Sobic002G055800--Sobic001G136400 Sobic002G055800--Sobic001G366300 Sobic003G001800 Sobic003G001800 Sobic002G055800--Sobic003G001800 Sobic002G055800--Sobic009G012500 Sobic002G055800--Sobic006G083900 Sobic002G055800--Sobic002G240000 Sobic004G142400 Sobic004G142400 Sobic002G055800--Sobic004G142400 Sobic008G018100--Sobic006G083900 Sobic006G234433 Sobic006G234433 Sobic008G018100--Sobic006G234433 Sobic008G018100--Sobic008G149300 Sobic008G018100--Sobic007G025600 Sobic008G018100--Sobic004G349550 Sobic005G126701 Sobic005G126701 Sobic008G018100--Sobic005G126701 Sobic008G018100--Sobic001G122600 Sobic006G217800 Sobic006G217800 Sobic009G012500--Sobic006G217800 Sobic009G012500--Sobic006G083900 Sobic007G008500 Sobic007G008500 Sobic009G012500--Sobic007G008500 Sobic001G393101 Sobic001G393101 Sobic009G012500--Sobic001G393101 Sobic009G012500--Sobic008G149300 Sobic001G166900 Sobic001G166900 Sobic009G012500--Sobic001G166900 Sobic003G443400 Sobic003G443400 Sobic009G012500--Sobic003G443400 Sobic009G012500--Sobic001G534200 Sobic009G012500--Sobic007G025600 Sobic008G149300--Sobic001G122600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.